Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PTPN9P43378 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
PTPN9P43378 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
PTPN9P43378 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PTPN9P43378 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PTPN9P43378 AC006455.2-201ENST00000429931 906 ntBASIC23.17■■□□□ 1.3
PTPN9P43378 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC23.17■■□□□ 1.3
PTPN9P43378 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
PTPN9P43378 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC23.17■■□□□ 1.3
PTPN9P43378 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
PTPN9P43378 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PTPN9P43378 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
PTPN9P43378 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
PTPN9P43378 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PTPN9P43378 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC23.16■■□□□ 1.3
PTPN9P43378 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC23.16■■□□□ 1.3
PTPN9P43378 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PTPN9P43378 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PTPN9P43378 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC23.16■■□□□ 1.3
PTPN9P43378 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC23.16■■□□□ 1.3
PTPN9P43378 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC23.16■■□□□ 1.3
PTPN9P43378 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC23.16■■□□□ 1.3
PTPN9P43378 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC23.16■■□□□ 1.3
PTPN9P43378 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PTPN9P43378 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
PTPN9P43378 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC23.16■■□□□ 1.3
PTPN9P43378 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PTPN9P43378 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
PTPN9P43378 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PTPN9P43378 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PTPN9P43378 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PTPN9P43378 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
PTPN9P43378 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PTPN9P43378 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
PTPN9P43378 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
PTPN9P43378 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC23.15■■□□□ 1.3
PTPN9P43378 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
PTPN9P43378 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC23.15■■□□□ 1.3
PTPN9P43378 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PTPN9P43378 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PTPN9P43378 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
PTPN9P43378 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
PTPN9P43378 AC092171.4-201ENST00000609130 632 ntBASIC23.15■■□□□ 1.3
PTPN9P43378 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PTPN9P43378 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
PTPN9P43378 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC23.15■■□□□ 1.3
PTPN9P43378 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC23.15■■□□□ 1.3
PTPN9P43378 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PTPN9P43378 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PTPN9P43378 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC23.15■■□□□ 1.3
PTPN9P43378 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
PTPN9P43378 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
PTPN9P43378 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
PTPN9P43378 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
PTPN9P43378 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
PTPN9P43378 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
PTPN9P43378 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC23.13■■□□□ 1.29
PTPN9P43378 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PTPN9P43378 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC23.13■■□□□ 1.29
PTPN9P43378 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
PTPN9P43378 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
PTPN9P43378 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC23.13■■□□□ 1.29
PTPN9P43378 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC23.13■■□□□ 1.29
PTPN9P43378 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC23.12■■□□□ 1.29
PTPN9P43378 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC23.12■■□□□ 1.29
PTPN9P43378 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC23.12■■□□□ 1.29
PTPN9P43378 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.12■■□□□ 1.29
PTPN9P43378 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
PTPN9P43378 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
PTPN9P43378 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
PTPN9P43378 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
PTPN9P43378 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
PTPN9P43378 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
PTPN9P43378 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC23.11■■□□□ 1.29
PTPN9P43378 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
PTPN9P43378 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC23.11■■□□□ 1.29
PTPN9P43378 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
PTPN9P43378 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
PTPN9P43378 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC23.11■■□□□ 1.29
PTPN9P43378 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
PTPN9P43378 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC23.1■■□□□ 1.29
PTPN9P43378 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PTPN9P43378 C1orf229-201ENST00000623686 2258 ntBASIC23.1■■□□□ 1.29
PTPN9P43378 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC23.1■■□□□ 1.29
PTPN9P43378 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
PTPN9P43378 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PTPN9P43378 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC23.1■■□□□ 1.29
PTPN9P43378 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC23.1■■□□□ 1.29
PTPN9P43378 pRNA.6-201ENST00000610482 90 ntBASIC23.1■■□□□ 1.29
PTPN9P43378 pRNA.5-201ENST00000612139 90 ntBASIC23.1■■□□□ 1.29
PTPN9P43378 pRNA.11-201ENST00000618423 90 ntBASIC23.1■■□□□ 1.29
PTPN9P43378 pRNA.13-201ENST00000619112 90 ntBASIC23.1■■□□□ 1.29
PTPN9P43378 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC23.1■■□□□ 1.29
PTPN9P43378 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.1■■□□□ 1.29
PTPN9P43378 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PTPN9P43378 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
PTPN9P43378 AC133561.1-201ENST00000568600 2415 ntBASIC23.1■■□□□ 1.29
PTPN9P43378 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC23.1■■□□□ 1.29
PTPN9P43378 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC23.1■■□□□ 1.29
PTPN9P43378 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC23.09■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms