Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC28.83■■■□□ 2.21
PTCD1O75127 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
PTCD1O75127 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC28.83■■■□□ 2.21
PTCD1O75127 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
PTCD1O75127 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
PTCD1O75127 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
PTCD1O75127 LHPP-203ENST00000392757 840 ntTSL 3 BASIC28.82■■■□□ 2.2
PTCD1O75127 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC28.82■■■□□ 2.2
PTCD1O75127 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
PTCD1O75127 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
PTCD1O75127 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
PTCD1O75127 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
PTCD1O75127 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
PTCD1O75127 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
PTCD1O75127 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC28.81■■■□□ 2.2
PTCD1O75127 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
PTCD1O75127 LINC02228-203ENST00000641970 1355 ntBASIC28.81■■■□□ 2.2
PTCD1O75127 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC28.81■■■□□ 2.2
PTCD1O75127 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
PTCD1O75127 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
PTCD1O75127 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
PTCD1O75127 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
PTCD1O75127 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC28.8■■■□□ 2.2
PTCD1O75127 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC28.8■■■□□ 2.2
PTCD1O75127 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
PTCD1O75127 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
PTCD1O75127 MED17-227ENST00000640521 2047 ntTSL 5 BASIC28.79■■■□□ 2.2
PTCD1O75127 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
PTCD1O75127 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
PTCD1O75127 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
PTCD1O75127 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC28.79■■■□□ 2.2
PTCD1O75127 NT5C3AP1-201ENST00000394500 1012 ntBASIC28.79■■■□□ 2.2
PTCD1O75127 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
PTCD1O75127 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC28.79■■■□□ 2.2
PTCD1O75127 LINC01529-204ENST00000636474 1715 ntBASIC28.79■■■□□ 2.2
PTCD1O75127 AC144652.1-201ENST00000609974 1624 ntBASIC28.79■■■□□ 2.2
PTCD1O75127 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC28.79■■■□□ 2.2
PTCD1O75127 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
PTCD1O75127 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC28.78■■■□□ 2.2
PTCD1O75127 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
PTCD1O75127 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC28.78■■■□□ 2.2
PTCD1O75127 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
PTCD1O75127 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
PTCD1O75127 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC28.78■■■□□ 2.2
PTCD1O75127 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
PTCD1O75127 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC28.78■■■□□ 2.2
PTCD1O75127 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC28.78■■■□□ 2.2
PTCD1O75127 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
PTCD1O75127 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC28.78■■■□□ 2.2
PTCD1O75127 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC28.78■■■□□ 2.2
PTCD1O75127 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC28.78■■■□□ 2.2
PTCD1O75127 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
PTCD1O75127 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
PTCD1O75127 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
PTCD1O75127 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
PTCD1O75127 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC28.77■■■□□ 2.2
PTCD1O75127 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC28.77■■■□□ 2.2
PTCD1O75127 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
PTCD1O75127 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
PTCD1O75127 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC28.77■■■□□ 2.2
PTCD1O75127 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC28.77■■■□□ 2.2
PTCD1O75127 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC28.76■■■□□ 2.19
PTCD1O75127 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC28.76■■■□□ 2.19
PTCD1O75127 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC28.76■■■□□ 2.19
PTCD1O75127 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC28.76■■■□□ 2.19
PTCD1O75127 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC28.76■■■□□ 2.19
PTCD1O75127 AP005435.1-201ENST00000529293 1178 ntBASIC28.76■■■□□ 2.19
PTCD1O75127 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
PTCD1O75127 AC105233.4-201ENST00000642045 216 ntBASIC28.76■■■□□ 2.19
PTCD1O75127 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
PTCD1O75127 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC28.76■■■□□ 2.19
PTCD1O75127 AC020928.2-201ENST00000588717 2197 ntBASIC28.75■■■□□ 2.19
PTCD1O75127 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC28.75■■■□□ 2.19
PTCD1O75127 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC28.75■■■□□ 2.19
PTCD1O75127 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
PTCD1O75127 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC28.75■■■□□ 2.19
PTCD1O75127 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
PTCD1O75127 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC28.74■■■□□ 2.19
PTCD1O75127 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
PTCD1O75127 MPST-204ENST00000404393 1329 ntTSL 5 BASIC28.74■■■□□ 2.19
PTCD1O75127 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
PTCD1O75127 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC28.74■■■□□ 2.19
PTCD1O75127 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
PTCD1O75127 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
PTCD1O75127 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
PTCD1O75127 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC28.74■■■□□ 2.19
PTCD1O75127 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
PTCD1O75127 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
PTCD1O75127 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
PTCD1O75127 STX4-202ENST00000394998 1498 ntTSL 2 BASIC28.73■■■□□ 2.19
PTCD1O75127 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC28.73■■■□□ 2.19
PTCD1O75127 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
PTCD1O75127 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
PTCD1O75127 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC28.73■■■□□ 2.19
PTCD1O75127 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
PTCD1O75127 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC28.72■■■□□ 2.19
PTCD1O75127 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC28.72■■■□□ 2.19
PTCD1O75127 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
PTCD1O75127 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC28.72■■■□□ 2.19
PTCD1O75127 VPS53-216ENST00000574029 585 ntTSL 4 BASIC28.72■■■□□ 2.19
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms