Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Chd6A3KFM7 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Chd6A3KFM7 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Chd6A3KFM7 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chd6A3KFM7 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Chd6A3KFM7 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Chd6A3KFM7 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Chd6A3KFM7 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Chd6A3KFM7 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC16.41■□□□□ 0.22
Chd6A3KFM7 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Chd6A3KFM7 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Chd6A3KFM7 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Chd6A3KFM7 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC16.4■□□□□ 0.22
Chd6A3KFM7 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Chd6A3KFM7 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC16.4■□□□□ 0.22
Chd6A3KFM7 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chd6A3KFM7 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Chd6A3KFM7 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chd6A3KFM7 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chd6A3KFM7 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Chd6A3KFM7 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chd6A3KFM7 Gm6659-201ENSMUST00000174752 547 ntBASIC16.39■□□□□ 0.22
Chd6A3KFM7 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Chd6A3KFM7 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chd6A3KFM7 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chd6A3KFM7 Gm27045-201ENSMUST00000182145 1402 ntBASIC16.39■□□□□ 0.21
Chd6A3KFM7 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chd6A3KFM7 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Chd6A3KFM7 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Chd6A3KFM7 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
Chd6A3KFM7 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chd6A3KFM7 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Chd6A3KFM7 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Chd6A3KFM7 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Chd6A3KFM7 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chd6A3KFM7 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC16.38■□□□□ 0.21
Chd6A3KFM7 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Chd6A3KFM7 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Chd6A3KFM7 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chd6A3KFM7 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chd6A3KFM7 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chd6A3KFM7 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
Chd6A3KFM7 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chd6A3KFM7 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chd6A3KFM7 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Chd6A3KFM7 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Chd6A3KFM7 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Chd6A3KFM7 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chd6A3KFM7 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Chd6A3KFM7 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Chd6A3KFM7 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Chd6A3KFM7 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Chd6A3KFM7 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC16.37■□□□□ 0.21
Chd6A3KFM7 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
Chd6A3KFM7 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Chd6A3KFM7 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Chd6A3KFM7 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Chd6A3KFM7 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Chd6A3KFM7 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Chd6A3KFM7 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC16.37■□□□□ 0.21
Chd6A3KFM7 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC16.36■□□□□ 0.21
Chd6A3KFM7 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Chd6A3KFM7 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
Chd6A3KFM7 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Chd6A3KFM7 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Chd6A3KFM7 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC16.36■□□□□ 0.21
Chd6A3KFM7 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Chd6A3KFM7 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
Chd6A3KFM7 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
Chd6A3KFM7 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Chd6A3KFM7 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC16.35■□□□□ 0.21
Chd6A3KFM7 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Chd6A3KFM7 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Chd6A3KFM7 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Chd6A3KFM7 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Chd6A3KFM7 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Chd6A3KFM7 AC137127.1-201ENSMUST00000213466 1078 ntBASIC16.35■□□□□ 0.21
Chd6A3KFM7 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC16.35■□□□□ 0.21
Chd6A3KFM7 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Chd6A3KFM7 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Chd6A3KFM7 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC16.34■□□□□ 0.21
Chd6A3KFM7 Gm20472-201ENSMUST00000174403 1240 ntBASIC16.34■□□□□ 0.21
Chd6A3KFM7 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
Chd6A3KFM7 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC16.34■□□□□ 0.21
Chd6A3KFM7 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Chd6A3KFM7 Gm10655-201ENSMUST00000098658 1397 ntBASIC16.34■□□□□ 0.21
Chd6A3KFM7 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Chd6A3KFM7 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Chd6A3KFM7 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
Chd6A3KFM7 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC16.34■□□□□ 0.21
Chd6A3KFM7 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Chd6A3KFM7 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Chd6A3KFM7 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Chd6A3KFM7 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Chd6A3KFM7 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.21
Chd6A3KFM7 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC16.33■□□□□ 0.21
Chd6A3KFM7 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Chd6A3KFM7 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Chd6A3KFM7 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Chd6A3KFM7 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 16.7 ms