Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Tom1l2-204ENSMUST00000095254 4940 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Gm42449-201ENSMUST00000200349 2258 ntBASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Gpc4-201ENSMUST00000033450 2651 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Micalcl-203ENSMUST00000106645 2309 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Ncam1-203ENSMUST00000192584 2525 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Cfb-207ENSMUST00000176203 2733 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Pcdha6-201ENSMUST00000193389 4653 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Upf3bQ3ULL6 Creb3l4-201ENSMUST00000029547 1553 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Gm10643-201ENSMUST00000098592 1577 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Gm37516-201ENSMUST00000192593 1954 ntBASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 4933408B17Rik-201ENSMUST00000056932 2362 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Ndufs1-203ENSMUST00000168099 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Abcf1-201ENSMUST00000043757 3161 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Bace1-202ENSMUST00000078111 4041 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Tmprss11c-201ENSMUST00000059424 1615 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Pear1-201ENSMUST00000029714 4260 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Acadsb-202ENSMUST00000117518 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Toe1-201ENSMUST00000030451 2090 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Apba2-201ENSMUST00000032732 3321 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Qrfpr-203ENSMUST00000197447 1690 ntTSL 5 BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Snx31-203ENSMUST00000161202 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Opn1mw-202ENSMUST00000101457 1233 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Trav12-3-201ENSMUST00000103657 442 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Ccl27a-204ENSMUST00000108035 731 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Ccl27a-205ENSMUST00000108036 841 ntAPPRIS ALT2 TSL 2 BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Gm11619-201ENSMUST00000117474 237 ntBASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Gm8659-201ENSMUST00000120024 1084 ntBASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Snrnp25-202ENSMUST00000121182 659 ntAPPRIS ALT2 TSL 3 BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Gm25288-201ENSMUST00000122800 265 ntBASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Gm16263-201ENSMUST00000144680 502 ntTSL 3 BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Asgr1-205ENSMUST00000146411 1188 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Gm11915-201ENSMUST00000153669 358 ntTSL 5 BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Gm23218-201ENSMUST00000158124 276 ntBASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 2700099C18Rik-202ENSMUST00000182402 1275 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Gm4430-202ENSMUST00000193902 1041 ntBASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Gm18463-201ENSMUST00000207258 474 ntBASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Gm18460-201ENSMUST00000208088 464 ntBASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Fcer2a-205ENSMUST00000208145 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Gm35713-201ENSMUST00000210516 199 ntBASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 E230034D01Rik-203ENSMUST00000217357 1159 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 AC155300.1-201ENSMUST00000219134 480 ntBASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 AC136986.1-201ENSMUST00000222829 380 ntTSL 2 BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 AC174797.2-202ENSMUST00000225729 568 ntBASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 CT573086.4-201ENSMUST00000226729 342 ntBASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 AC161172.1-201ENSMUST00000227801 486 ntBASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Aldh1a3-201ENSMUST00000015278 3443 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Cd300lg-201ENSMUST00000017453 2353 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Rnf40-201ENSMUST00000033088 3906 ntTSL 5 BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Mx1-202ENSMUST00000113768 2695 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Ntrk3-205ENSMUST00000193002 2678 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 4932438H23Rik-201ENSMUST00000035689 2684 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Cd2bp2-203ENSMUST00000205316 2912 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Sdk1-201ENSMUST00000074546 7063 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Myc-208ENSMUST00000191178 1362 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Cryz-201ENSMUST00000029850 2507 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Slc39a14-210ENSMUST00000152067 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Slc7a4-201ENSMUST00000063544 2758 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Fhdc1-201ENSMUST00000091002 4162 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Upf3bQ3ULL6 Gpr149-201ENSMUST00000058535 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Upf3bQ3ULL6 Pcdhb2-201ENSMUST00000056522 2813 ntAPPRIS P1 BASIC11.27□□□□□ -0.6
Upf3bQ3ULL6 Cfap74-204ENSMUST00000123952 2365 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Upf3bQ3ULL6 Gm45012-201ENSMUST00000208323 1666 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Upf3bQ3ULL6 Myo9a-205ENSMUST00000135298 12198 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.6
Upf3bQ3ULL6 Hmg20a-205ENSMUST00000215269 1700 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Rnf216-201ENSMUST00000053498 4474 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Zbtb21-203ENSMUST00000113734 6010 ntAPPRIS P4 TSL 2 BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Pask-201ENSMUST00000027493 5779 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Mindy4-201ENSMUST00000053094 4270 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Cdh15-201ENSMUST00000034443 3251 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Prpf6-203ENSMUST00000136481 3048 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Lin54-209ENSMUST00000152387 2760 ntTSL 5 BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Anks1b-203ENSMUST00000099368 2799 ntTSL 5 BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Rxfp2-201ENSMUST00000065745 2539 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Fhl1-204ENSMUST00000114772 2283 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Gm7052-201ENSMUST00000167568 1512 ntBASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Schip1-202ENSMUST00000169909 1517 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Banf2-202ENSMUST00000110032 409 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Gm12397-201ENSMUST00000117674 615 ntBASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Rpl17-ps1-201ENSMUST00000119156 552 ntBASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Gm11675-201ENSMUST00000121873 832 ntBASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Gm15498-201ENSMUST00000126693 723 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 4930594O21Rik-201ENSMUST00000129750 629 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Rab7b-205ENSMUST00000136247 497 ntTSL 5 BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Gm5274-201ENSMUST00000182641 1003 ntBASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Mir8111-201ENSMUST00000184463 137 ntBASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Nmbr-206ENSMUST00000190114 662 ntTSL 3 BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Ighv5-8-202ENSMUST00000191967 337 ntBASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Gm37362-201ENSMUST00000194567 634 ntTSL 5 BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Gm43506-201ENSMUST00000200675 753 ntBASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Gm5189-201ENSMUST00000221796 261 ntBASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 CT010486.3-201ENSMUST00000224555 811 ntBASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Banf2-201ENSMUST00000037722 571 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Zfp629-203ENSMUST00000122066 5850 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Pcdhb9-201ENSMUST00000057228 3055 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Ppef2-202ENSMUST00000201130 2878 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Kif4-201ENSMUST00000048962 4983 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Lrtm2-204ENSMUST00000168793 3407 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Scnn1g-201ENSMUST00000000221 2991 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Upf3bQ3ULL6 Grip1-216ENSMUST00000154238 2482 ntTSL 5 BASIC11.27□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 88.3 ms