Protein–RNA interactions for Protein: Q99LU0

Chmp1b1, Charged multivesicular body protein 1b-1, mousemouse

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp1b1Q99LU0 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Chmp1b1Q99LU0 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Chmp1b1Q99LU0 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Chmp1b1Q99LU0 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
Chmp1b1Q99LU0 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC18.81■□□□□ 0.6
Chmp1b1Q99LU0 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chmp1b1Q99LU0 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Chmp1b1Q99LU0 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC18.8■□□□□ 0.6
Chmp1b1Q99LU0 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC18.8■□□□□ 0.6
Chmp1b1Q99LU0 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Chmp1b1Q99LU0 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Chmp1b1Q99LU0 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Chmp1b1Q99LU0 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC18.8■□□□□ 0.6
Chmp1b1Q99LU0 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Chmp1b1Q99LU0 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC18.8■□□□□ 0.6
Chmp1b1Q99LU0 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp1b1Q99LU0 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp1b1Q99LU0 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp1b1Q99LU0 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp1b1Q99LU0 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp1b1Q99LU0 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC18.79■□□□□ 0.6
Chmp1b1Q99LU0 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp1b1Q99LU0 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp1b1Q99LU0 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp1b1Q99LU0 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp1b1Q99LU0 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp1b1Q99LU0 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp1b1Q99LU0 AC122428.2-201ENSMUST00000216321 1832 ntBASIC18.79■□□□□ 0.6
Chmp1b1Q99LU0 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp1b1Q99LU0 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Chmp1b1Q99LU0 Gm43006-201ENSMUST00000197702 1602 ntBASIC18.78■□□□□ 0.6
Chmp1b1Q99LU0 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Chmp1b1Q99LU0 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Chmp1b1Q99LU0 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Chmp1b1Q99LU0 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Chmp1b1Q99LU0 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Chmp1b1Q99LU0 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Chmp1b1Q99LU0 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Chmp1b1Q99LU0 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Chmp1b1Q99LU0 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Chmp1b1Q99LU0 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Chmp1b1Q99LU0 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Chmp1b1Q99LU0 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Chmp1b1Q99LU0 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Chmp1b1Q99LU0 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Chmp1b1Q99LU0 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chmp1b1Q99LU0 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chmp1b1Q99LU0 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC18.76■□□□□ 0.59
Chmp1b1Q99LU0 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chmp1b1Q99LU0 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
Chmp1b1Q99LU0 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chmp1b1Q99LU0 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Chmp1b1Q99LU0 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chmp1b1Q99LU0 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chmp1b1Q99LU0 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Chmp1b1Q99LU0 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
Chmp1b1Q99LU0 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC18.75■□□□□ 0.59
Chmp1b1Q99LU0 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC18.75■□□□□ 0.59
Chmp1b1Q99LU0 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Chmp1b1Q99LU0 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chmp1b1Q99LU0 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chmp1b1Q99LU0 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chmp1b1Q99LU0 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Chmp1b1Q99LU0 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp1b1Q99LU0 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp1b1Q99LU0 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC18.74■□□□□ 0.59
Chmp1b1Q99LU0 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp1b1Q99LU0 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp1b1Q99LU0 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp1b1Q99LU0 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Chmp1b1Q99LU0 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp1b1Q99LU0 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp1b1Q99LU0 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Chmp1b1Q99LU0 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC18.74■□□□□ 0.59
Chmp1b1Q99LU0 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp1b1Q99LU0 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp1b1Q99LU0 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
Chmp1b1Q99LU0 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Chmp1b1Q99LU0 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Chmp1b1Q99LU0 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp1b1Q99LU0 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp1b1Q99LU0 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp1b1Q99LU0 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Chmp1b1Q99LU0 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp1b1Q99LU0 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp1b1Q99LU0 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp1b1Q99LU0 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp1b1Q99LU0 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Chmp1b1Q99LU0 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp1b1Q99LU0 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Chmp1b1Q99LU0 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Chmp1b1Q99LU0 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Chmp1b1Q99LU0 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
Chmp1b1Q99LU0 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC18.72■□□□□ 0.59
Chmp1b1Q99LU0 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC18.72■□□□□ 0.59
Chmp1b1Q99LU0 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Chmp1b1Q99LU0 Gm22238-201ENSMUST00000175222 88 ntBASIC18.72■□□□□ 0.59
Chmp1b1Q99LU0 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Chmp1b1Q99LU0 Gm7143-201ENSMUST00000222811 859 ntBASIC18.72■□□□□ 0.59
Chmp1b1Q99LU0 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms