Protein–RNA interactions for Protein: Q9ES00

Ube4b, Ubiquitin conjugation factor E4 B, mousemouse

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4bQ9ES00 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Ube4bQ9ES00 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC24.74■■□□□ 1.55
Ube4bQ9ES00 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Ube4bQ9ES00 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC24.73■■□□□ 1.55
Ube4bQ9ES00 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
Ube4bQ9ES00 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Ube4bQ9ES00 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Ube4bQ9ES00 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
Ube4bQ9ES00 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC24.71■■□□□ 1.55
Ube4bQ9ES00 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC24.71■■□□□ 1.55
Ube4bQ9ES00 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
Ube4bQ9ES00 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Ube4bQ9ES00 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Ube4bQ9ES00 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Ube4bQ9ES00 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
Ube4bQ9ES00 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Ube4bQ9ES00 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Ube4bQ9ES00 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
Ube4bQ9ES00 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
Ube4bQ9ES00 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC24.61■■□□□ 1.53
Ube4bQ9ES00 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
Ube4bQ9ES00 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Ube4bQ9ES00 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
Ube4bQ9ES00 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
Ube4bQ9ES00 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
Ube4bQ9ES00 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Ube4bQ9ES00 Gm43445-201ENSMUST00000198564 2091 ntBASIC24.58■■□□□ 1.53
Ube4bQ9ES00 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Ube4bQ9ES00 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
Ube4bQ9ES00 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
Ube4bQ9ES00 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC24.54■■□□□ 1.52
Ube4bQ9ES00 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Ube4bQ9ES00 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Ube4bQ9ES00 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Ube4bQ9ES00 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC24.48■■□□□ 1.51
Ube4bQ9ES00 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ube4bQ9ES00 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Ube4bQ9ES00 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Ube4bQ9ES00 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC24.44■■□□□ 1.5
Ube4bQ9ES00 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Ube4bQ9ES00 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Ube4bQ9ES00 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Ube4bQ9ES00 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Ube4bQ9ES00 Amer2-203ENSMUST00000225247 2662 ntBASIC24.42■■□□□ 1.5
Ube4bQ9ES00 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC24.41■■□□□ 1.5
Ube4bQ9ES00 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
Ube4bQ9ES00 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
Ube4bQ9ES00 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC24.4■■□□□ 1.5
Ube4bQ9ES00 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
Ube4bQ9ES00 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
Ube4bQ9ES00 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.48
Ube4bQ9ES00 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
Ube4bQ9ES00 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
Ube4bQ9ES00 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Ube4bQ9ES00 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
Ube4bQ9ES00 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Ube4bQ9ES00 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Ube4bQ9ES00 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC24.29■■□□□ 1.48
Ube4bQ9ES00 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
Ube4bQ9ES00 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Ube4bQ9ES00 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Ube4bQ9ES00 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Ube4bQ9ES00 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
Ube4bQ9ES00 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Ube4bQ9ES00 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC24.27■■□□□ 1.48
Ube4bQ9ES00 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
Ube4bQ9ES00 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Ube4bQ9ES00 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Ube4bQ9ES00 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Ube4bQ9ES00 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Ube4bQ9ES00 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Ube4bQ9ES00 Fezf2-202ENSMUST00000224023 1917 ntBASIC24.25■■□□□ 1.47
Ube4bQ9ES00 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
Ube4bQ9ES00 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Ube4bQ9ES00 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Ube4bQ9ES00 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Ube4bQ9ES00 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
Ube4bQ9ES00 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
Ube4bQ9ES00 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
Ube4bQ9ES00 Rab21-202ENSMUST00000218831 843 ntBASIC24.21■■□□□ 1.47
Ube4bQ9ES00 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
Ube4bQ9ES00 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC24.2■■□□□ 1.47
Ube4bQ9ES00 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC24.2■■□□□ 1.47
Ube4bQ9ES00 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC24.2■■□□□ 1.46
Ube4bQ9ES00 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Ube4bQ9ES00 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Ube4bQ9ES00 Zfp131-207ENSMUST00000224946 1783 ntBASIC24.17■■□□□ 1.46
Ube4bQ9ES00 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Ube4bQ9ES00 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Ube4bQ9ES00 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
Ube4bQ9ES00 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Ube4bQ9ES00 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
Ube4bQ9ES00 AC153890.1-201ENSMUST00000220021 2469 ntBASIC24.11■■□□□ 1.45
Ube4bQ9ES00 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
Ube4bQ9ES00 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Ube4bQ9ES00 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC24.09■■□□□ 1.45
Ube4bQ9ES00 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Ube4bQ9ES00 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC24.08■■□□□ 1.45
Ube4bQ9ES00 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Ube4bQ9ES00 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms