Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC31.15■■■□□ 2.58
Ccdc9Q8VC31 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
Ccdc9Q8VC31 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Ccdc9Q8VC31 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Ccdc9Q8VC31 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC31.12■■■□□ 2.57
Ccdc9Q8VC31 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC31.11■■■□□ 2.57
Ccdc9Q8VC31 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Ccdc9Q8VC31 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Ccdc9Q8VC31 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Ccdc9Q8VC31 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
Ccdc9Q8VC31 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Ccdc9Q8VC31 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Ccdc9Q8VC31 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC31■■■□□ 2.55
Ccdc9Q8VC31 Gm43445-201ENSMUST00000198564 2091 ntBASIC31■■■□□ 2.55
Ccdc9Q8VC31 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Ccdc9Q8VC31 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC30.99■■■□□ 2.55
Ccdc9Q8VC31 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC30.98■■■□□ 2.55
Ccdc9Q8VC31 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
Ccdc9Q8VC31 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC30.98■■■□□ 2.55
Ccdc9Q8VC31 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Ccdc9Q8VC31 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
Ccdc9Q8VC31 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
Ccdc9Q8VC31 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
Ccdc9Q8VC31 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC30.94■■■□□ 2.54
Ccdc9Q8VC31 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
Ccdc9Q8VC31 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC30.93■■■□□ 2.54
Ccdc9Q8VC31 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
Ccdc9Q8VC31 Fezf2-202ENSMUST00000224023 1917 ntBASIC30.92■■■□□ 2.54
Ccdc9Q8VC31 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Ccdc9Q8VC31 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Ccdc9Q8VC31 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC30.88■■■□□ 2.53
Ccdc9Q8VC31 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
Ccdc9Q8VC31 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Ccdc9Q8VC31 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
Ccdc9Q8VC31 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC30.83■■■□□ 2.53
Ccdc9Q8VC31 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC30.8■■■□□ 2.52
Ccdc9Q8VC31 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
Ccdc9Q8VC31 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Ccdc9Q8VC31 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC30.74■■■□□ 2.51
Ccdc9Q8VC31 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Ccdc9Q8VC31 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
Ccdc9Q8VC31 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Ccdc9Q8VC31 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
Ccdc9Q8VC31 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC30.67■■■□□ 2.5
Ccdc9Q8VC31 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
Ccdc9Q8VC31 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC30.66■■■□□ 2.5
Ccdc9Q8VC31 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC30.66■■■□□ 2.5
Ccdc9Q8VC31 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
Ccdc9Q8VC31 Amer2-203ENSMUST00000225247 2662 ntBASIC30.65■■■□□ 2.5
Ccdc9Q8VC31 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
Ccdc9Q8VC31 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC30.64■■■□□ 2.5
Ccdc9Q8VC31 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
Ccdc9Q8VC31 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
Ccdc9Q8VC31 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
Ccdc9Q8VC31 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC30.62■■■□□ 2.49
Ccdc9Q8VC31 AC153890.1-201ENSMUST00000220021 2469 ntBASIC30.61■■■□□ 2.49
Ccdc9Q8VC31 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC30.6■■■□□ 2.49
Ccdc9Q8VC31 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
Ccdc9Q8VC31 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Ccdc9Q8VC31 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Ccdc9Q8VC31 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Ccdc9Q8VC31 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC30.54■■■□□ 2.48
Ccdc9Q8VC31 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC30.54■■■□□ 2.48
Ccdc9Q8VC31 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Ccdc9Q8VC31 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC30.53■■■□□ 2.48
Ccdc9Q8VC31 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Ccdc9Q8VC31 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
Ccdc9Q8VC31 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
Ccdc9Q8VC31 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Ccdc9Q8VC31 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC30.5■■■□□ 2.47
Ccdc9Q8VC31 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
Ccdc9Q8VC31 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Ccdc9Q8VC31 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Ccdc9Q8VC31 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Ccdc9Q8VC31 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC30.44■■■□□ 2.46
Ccdc9Q8VC31 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC30.43■■■□□ 2.46
Ccdc9Q8VC31 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Ccdc9Q8VC31 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
Ccdc9Q8VC31 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Ccdc9Q8VC31 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Ccdc9Q8VC31 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Ccdc9Q8VC31 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Ccdc9Q8VC31 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Ccdc9Q8VC31 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
Ccdc9Q8VC31 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC30.35■■■□□ 2.45
Ccdc9Q8VC31 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Ccdc9Q8VC31 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Ccdc9Q8VC31 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
Ccdc9Q8VC31 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.45
Ccdc9Q8VC31 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
Ccdc9Q8VC31 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Ccdc9Q8VC31 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC30.29■■■□□ 2.44
Ccdc9Q8VC31 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC30.29■■■□□ 2.44
Ccdc9Q8VC31 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
Ccdc9Q8VC31 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC30.28■■■□□ 2.44
Ccdc9Q8VC31 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC30.28■■■□□ 2.44
Ccdc9Q8VC31 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Ccdc9Q8VC31 Gm25238-201ENSMUST00000174914 89 ntBASIC30.27■■■□□ 2.44
Ccdc9Q8VC31 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC30.26■■■□□ 2.44
Ccdc9Q8VC31 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms