Protein–RNA interactions for Protein: Q5R1C3

Trav3-3, T cell receptor alpha variable 3-3 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-3Q5R1C3 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trav3-3Q5R1C3 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trav3-3Q5R1C3 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trav3-3Q5R1C3 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
Trav3-3Q5R1C3 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trav3-3Q5R1C3 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav3-3Q5R1C3 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav3-3Q5R1C3 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav3-3Q5R1C3 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trav3-3Q5R1C3 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trav3-3Q5R1C3 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Trav3-3Q5R1C3 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trav3-3Q5R1C3 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trav3-3Q5R1C3 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Trav3-3Q5R1C3 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav3-3Q5R1C3 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trav3-3Q5R1C3 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Trav3-3Q5R1C3 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC19.14■□□□□ 0.66
Trav3-3Q5R1C3 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Trav3-3Q5R1C3 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trav3-3Q5R1C3 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trav3-3Q5R1C3 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Trav3-3Q5R1C3 Gm6658-202ENSMUST00000209493 1885 ntBASIC19.11■□□□□ 0.65
Trav3-3Q5R1C3 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Trav3-3Q5R1C3 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav3-3Q5R1C3 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav3-3Q5R1C3 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trav3-3Q5R1C3 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trav3-3Q5R1C3 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Trav3-3Q5R1C3 Gm27325-201ENSMUST00000175467 74 ntBASIC19.07■□□□□ 0.64
Trav3-3Q5R1C3 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trav3-3Q5R1C3 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav3-3Q5R1C3 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trav3-3Q5R1C3 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trav3-3Q5R1C3 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav3-3Q5R1C3 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav3-3Q5R1C3 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav3-3Q5R1C3 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Trav3-3Q5R1C3 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trav3-3Q5R1C3 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trav3-3Q5R1C3 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Trav3-3Q5R1C3 Gm43445-201ENSMUST00000198564 2091 ntBASIC19.01■□□□□ 0.63
Trav3-3Q5R1C3 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Trav3-3Q5R1C3 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Trav3-3Q5R1C3 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Trav3-3Q5R1C3 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trav3-3Q5R1C3 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Trav3-3Q5R1C3 Fezf2-202ENSMUST00000224023 1917 ntBASIC18.98■□□□□ 0.63
Trav3-3Q5R1C3 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Trav3-3Q5R1C3 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav3-3Q5R1C3 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trav3-3Q5R1C3 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trav3-3Q5R1C3 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Trav3-3Q5R1C3 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav3-3Q5R1C3 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Trav3-3Q5R1C3 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Trav3-3Q5R1C3 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav3-3Q5R1C3 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC18.92■□□□□ 0.62
Trav3-3Q5R1C3 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav3-3Q5R1C3 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav3-3Q5R1C3 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav3-3Q5R1C3 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav3-3Q5R1C3 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav3-3Q5R1C3 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC18.91■□□□□ 0.62
Trav3-3Q5R1C3 AC153890.1-201ENSMUST00000220021 2469 ntBASIC18.91■□□□□ 0.62
Trav3-3Q5R1C3 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav3-3Q5R1C3 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav3-3Q5R1C3 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav3-3Q5R1C3 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav3-3Q5R1C3 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC18.89■□□□□ 0.61
Trav3-3Q5R1C3 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC18.89■□□□□ 0.61
Trav3-3Q5R1C3 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trav3-3Q5R1C3 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Trav3-3Q5R1C3 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trav3-3Q5R1C3 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trav3-3Q5R1C3 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav3-3Q5R1C3 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trav3-3Q5R1C3 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav3-3Q5R1C3 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav3-3Q5R1C3 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav3-3Q5R1C3 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trav3-3Q5R1C3 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav3-3Q5R1C3 Amer2-203ENSMUST00000225247 2662 ntBASIC18.86■□□□□ 0.61
Trav3-3Q5R1C3 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav3-3Q5R1C3 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav3-3Q5R1C3 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Trav3-3Q5R1C3 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trav3-3Q5R1C3 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav3-3Q5R1C3 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC18.82■□□□□ 0.6
Trav3-3Q5R1C3 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Trav3-3Q5R1C3 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trav3-3Q5R1C3 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav3-3Q5R1C3 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav3-3Q5R1C3 Gm25238-201ENSMUST00000174914 89 ntBASIC18.78■□□□□ 0.6
Trav3-3Q5R1C3 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trav3-3Q5R1C3 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Trav3-3Q5R1C3 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trav3-3Q5R1C3 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trav3-3Q5R1C3 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trav3-3Q5R1C3 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 48.3 ms