Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC33.42■■■□□ 2.94
Rnf180Q3U827 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC33.4■■■□□ 2.94
Rnf180Q3U827 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC33.34■■■□□ 2.93
Rnf180Q3U827 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
Rnf180Q3U827 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC33.32■■■□□ 2.92
Rnf180Q3U827 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC33.28■■■□□ 2.92
Rnf180Q3U827 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC33.26■■■□□ 2.92
Rnf180Q3U827 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.92
Rnf180Q3U827 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC33.26■■■□□ 2.91
Rnf180Q3U827 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC33.25■■■□□ 2.91
Rnf180Q3U827 Psd-208ENSMUST00000224556 2034 ntBASIC33.24■■■□□ 2.91
Rnf180Q3U827 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC33.24■■■□□ 2.91
Rnf180Q3U827 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC33.22■■■□□ 2.91
Rnf180Q3U827 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC33.2■■■□□ 2.91
Rnf180Q3U827 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC33.16■■■□□ 2.9
Rnf180Q3U827 Gm8503-201ENSMUST00000118131 455 ntBASIC33.14■■■□□ 2.9
Rnf180Q3U827 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC33.13■■■□□ 2.89
Rnf180Q3U827 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC33.12■■■□□ 2.89
Rnf180Q3U827 Gm9939-201ENSMUST00000067161 1154 ntBASIC33.12■■■□□ 2.89
Rnf180Q3U827 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
Rnf180Q3U827 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
Rnf180Q3U827 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC33.1■■■□□ 2.89
Rnf180Q3U827 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC33.09■■■□□ 2.89
Rnf180Q3U827 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC33.08■■■□□ 2.89
Rnf180Q3U827 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
Rnf180Q3U827 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC33.06■■■□□ 2.88
Rnf180Q3U827 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
Rnf180Q3U827 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC32.94■■■□□ 2.86
Rnf180Q3U827 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC32.88■■■□□ 2.85
Rnf180Q3U827 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC32.84■■■□□ 2.85
Rnf180Q3U827 Gm24970-201ENSMUST00000175582 82 ntBASIC32.84■■■□□ 2.85
Rnf180Q3U827 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC32.83■■■□□ 2.85
Rnf180Q3U827 Gm6821-201ENSMUST00000107540 542 ntBASIC32.83■■■□□ 2.85
Rnf180Q3U827 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
Rnf180Q3U827 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC32.81■■■□□ 2.84
Rnf180Q3U827 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC32.79■■■□□ 2.84
Rnf180Q3U827 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
Rnf180Q3U827 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
Rnf180Q3U827 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC32.73■■■□□ 2.83
Rnf180Q3U827 Gm10524-201ENSMUST00000181931 1893 ntBASIC32.72■■■□□ 2.83
Rnf180Q3U827 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
Rnf180Q3U827 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
Rnf180Q3U827 Gm42596-201ENSMUST00000196305 1958 ntBASIC32.72■■■□□ 2.83
Rnf180Q3U827 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
Rnf180Q3U827 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC32.65■■■□□ 2.82
Rnf180Q3U827 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
Rnf180Q3U827 CT025624.2-201ENSMUST00000223609 1909 ntBASIC32.63■■■□□ 2.81
Rnf180Q3U827 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
Rnf180Q3U827 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC32.61■■■□□ 2.81
Rnf180Q3U827 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
Rnf180Q3U827 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
Rnf180Q3U827 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
Rnf180Q3U827 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
Rnf180Q3U827 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
Rnf180Q3U827 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
Rnf180Q3U827 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC32.53■■■□□ 2.8
Rnf180Q3U827 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
Rnf180Q3U827 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC32.47■■■□□ 2.79
Rnf180Q3U827 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC32.45■■■□□ 2.79
Rnf180Q3U827 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
Rnf180Q3U827 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
Rnf180Q3U827 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC32.4■■■□□ 2.78
Rnf180Q3U827 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC32.38■■■□□ 2.77
Rnf180Q3U827 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
Rnf180Q3U827 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC32.35■■■□□ 2.77
Rnf180Q3U827 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC32.29■■■□□ 2.76
Rnf180Q3U827 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC32.25■■■□□ 2.75
Rnf180Q3U827 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
Rnf180Q3U827 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC32.22■■■□□ 2.75
Rnf180Q3U827 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC32.22■■■□□ 2.75
Rnf180Q3U827 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC32.21■■■□□ 2.75
Rnf180Q3U827 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC32.19■■■□□ 2.74
Rnf180Q3U827 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
Rnf180Q3U827 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
Rnf180Q3U827 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC32.17■■■□□ 2.74
Rnf180Q3U827 Mir6538-201ENSMUST00000183713 110 ntBASIC32.16■■■□□ 2.74
Rnf180Q3U827 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
Rnf180Q3U827 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC32.16■■■□□ 2.74
Rnf180Q3U827 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
Rnf180Q3U827 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
Rnf180Q3U827 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC32.14■■■□□ 2.74
Rnf180Q3U827 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC32.13■■■□□ 2.73
Rnf180Q3U827 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
Rnf180Q3U827 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
Rnf180Q3U827 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Rnf180Q3U827 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
Rnf180Q3U827 Gm7432-201ENSMUST00000210343 879 ntBASIC32.1■■■□□ 2.73
Rnf180Q3U827 Gm15039-201ENSMUST00000118914 875 ntBASIC32.09■■■□□ 2.73
Rnf180Q3U827 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC32.09■■■□□ 2.73
Rnf180Q3U827 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC32.09■■■□□ 2.73
Rnf180Q3U827 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
Rnf180Q3U827 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
Rnf180Q3U827 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
Rnf180Q3U827 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC32.06■■■□□ 2.72
Rnf180Q3U827 Mipep-204ENSMUST00000225043 1548 ntBASIC32.05■■■□□ 2.72
Rnf180Q3U827 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
Rnf180Q3U827 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC32.04■■■□□ 2.72
Rnf180Q3U827 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC32.02■■■□□ 2.72
Rnf180Q3U827 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
Rnf180Q3U827 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
Retrieved 100 of 76,532 protein–RNA pairs in 13.5 ms