Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC28,28■■■□□ 2,12
Sox1P53783 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC28,24■■■□□ 2,11
Sox1P53783 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC28,22■■■□□ 2,11
Sox1P53783 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC28,21■■■□□ 2,11
Sox1P53783 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC28,2■■■□□ 2,1
Sox1P53783 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC28,19■■■□□ 2,1
Sox1P53783 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC28,18■■■□□ 2,1
Sox1P53783 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC28,17■■■□□ 2,1
Sox1P53783 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC28,15■■■□□ 2,1
Sox1P53783 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC28,14■■■□□ 2,09
Sox1P53783 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC28,12■■■□□ 2,09
Sox1P53783 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC28,11■■■□□ 2,09
Sox1P53783 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC28,08■■■□□ 2,09
Sox1P53783 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC28,03■■■□□ 2,08
Sox1P53783 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC28,02■■■□□ 2,08
Sox1P53783 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC28,01■■■□□ 2,07
Sox1P53783 Gm42596-201ENSMUST00000196305 1958 ntBASIC28■■■□□ 2,07
Sox1P53783 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC28■■■□□ 2,07
Sox1P53783 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2,07
Sox1P53783 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC28■■■□□ 2,07
Sox1P53783 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC27,99■■■□□ 2,07
Sox1P53783 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC27,99■■■□□ 2,07
Sox1P53783 Gm10524-201ENSMUST00000181931 1893 ntBASIC27,99■■■□□ 2,07
Sox1P53783 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC27,99■■■□□ 2,07
Sox1P53783 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC27,98■■■□□ 2,07
Sox1P53783 Gm9939-201ENSMUST00000067161 1154 ntBASIC27,96■■■□□ 2,07
Sox1P53783 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC27,94■■■□□ 2,06
Sox1P53783 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC27,92■■■□□ 2,06
Sox1P53783 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC27,91■■■□□ 2,06
Sox1P53783 Gm8503-201ENSMUST00000118131 455 ntBASIC27,91■■■□□ 2,06
Sox1P53783 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC27,9■■■□□ 2,06
Sox1P53783 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC27,87■■■□□ 2,05
Sox1P53783 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC27,85■■■□□ 2,05
Sox1P53783 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC27,85■■■□□ 2,05
Sox1P53783 CT025624.2-201ENSMUST00000223609 1909 ntBASIC27,84■■■□□ 2,05
Sox1P53783 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC27,83■■■□□ 2,05
Sox1P53783 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC27,83■■■□□ 2,05
Sox1P53783 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC27,83■■■□□ 2,05
Sox1P53783 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC27,82■■■□□ 2,04
Sox1P53783 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC27,8■■■□□ 2,04
Sox1P53783 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC27,71■■■□□ 2,03
Sox1P53783 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC27,7■■■□□ 2,03
Sox1P53783 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC27,7■■■□□ 2,02
Sox1P53783 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC27,69■■■□□ 2,02
Sox1P53783 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC27,69■■■□□ 2,02
Sox1P53783 Gm6821-201ENSMUST00000107540 542 ntBASIC27,69■■■□□ 2,02
Sox1P53783 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC27,67■■■□□ 2,02
Sox1P53783 Gm24970-201ENSMUST00000175582 82 ntBASIC27,66■■■□□ 2,02
Sox1P53783 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC27,66■■■□□ 2,02
Sox1P53783 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC27,65■■■□□ 2,02
Sox1P53783 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC27,64■■■□□ 2,02
Sox1P53783 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC27,61■■■□□ 2,01
Sox1P53783 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC27,61■■■□□ 2,01
Sox1P53783 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC27,56■■■□□ 2
Sox1P53783 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC27,56■■■□□ 2
Sox1P53783 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC27,56■■■□□ 2
Sox1P53783 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC27,54■■■□□ 2
Sox1P53783 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC27,53■■■□□ 2
Sox1P53783 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC27,52■■■□□ 2
Sox1P53783 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC27,52■■■□□ 2
Sox1P53783 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC27,5■■□□□ 1,99
Sox1P53783 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC27,49■■□□□ 1,99
Sox1P53783 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC27,45■■□□□ 1,98
Sox1P53783 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC27,44■■□□□ 1,98
Sox1P53783 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC27,41■■□□□ 1,98
Sox1P53783 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC27,38■■□□□ 1,97
Sox1P53783 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC27,38■■□□□ 1,97
Sox1P53783 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC27,36■■□□□ 1,97
Sox1P53783 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC27,33■■□□□ 1,97
Sox1P53783 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC27,32■■□□□ 1,96
Sox1P53783 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC27,31■■□□□ 1,96
Sox1P53783 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC27,29■■□□□ 1,96
Sox1P53783 Zfp131-207ENSMUST00000224946 1783 ntBASIC27,27■■□□□ 1,96
Sox1P53783 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC27,26■■□□□ 1,95
Sox1P53783 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC27,25■■□□□ 1,95
Sox1P53783 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC27,25■■□□□ 1,95
Sox1P53783 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC27,25■■□□□ 1,95
Sox1P53783 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC27,25■■□□□ 1,95
Sox1P53783 Mipep-204ENSMUST00000225043 1548 ntBASIC27,23■■□□□ 1,95
Sox1P53783 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC27,23■■□□□ 1,95
Sox1P53783 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC27,22■■□□□ 1,95
Sox1P53783 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC27,21■■□□□ 1,95
Sox1P53783 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC27,2■■□□□ 1,94
Sox1P53783 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC27,2■■□□□ 1,94
Sox1P53783 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC27,18■■□□□ 1,94
Sox1P53783 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC27,17■■□□□ 1,94
Sox1P53783 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC27,15■■□□□ 1,94
Sox1P53783 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC27,14■■□□□ 1,94
Sox1P53783 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC27,14■■□□□ 1,94
Sox1P53783 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC27,12■■□□□ 1,93
Sox1P53783 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC27,11■■□□□ 1,93
Sox1P53783 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC27,11■■□□□ 1,93
Sox1P53783 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC27,11■■□□□ 1,93
Sox1P53783 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC27,1■■□□□ 1,93
Sox1P53783 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC27,09■■□□□ 1,93
Sox1P53783 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC27,09■■□□□ 1,93
Sox1P53783 Gm42809-201ENSMUST00000198429 1138 ntBASIC27,09■■□□□ 1,93
Sox1P53783 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC27,08■■□□□ 1,93
Sox1P53783 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC27,08■■□□□ 1,93
Sox1P53783 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC27,06■■□□□ 1,92
Retrieved 100 of 76,532 protein–RNA pairs in 34,1 ms