Protein–RNA interactions for Protein: A0A075B615

Trav4n-4, T cell receptor alpha variable 4D-4 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4n-4A0A075B615 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav4n-4A0A075B615 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trav4n-4A0A075B615 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trav4n-4A0A075B615 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trav4n-4A0A075B615 Gm43445-201ENSMUST00000198564 2091 ntBASIC18.01■□□□□ 0.47
Trav4n-4A0A075B615 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Trav4n-4A0A075B615 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Trav4n-4A0A075B615 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
Trav4n-4A0A075B615 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trav4n-4A0A075B615 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trav4n-4A0A075B615 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav4n-4A0A075B615 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trav4n-4A0A075B615 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Trav4n-4A0A075B615 Gm23366-201ENSMUST00000175022 89 ntBASIC17.97■□□□□ 0.47
Trav4n-4A0A075B615 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trav4n-4A0A075B615 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Trav4n-4A0A075B615 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC17.96■□□□□ 0.47
Trav4n-4A0A075B615 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Trav4n-4A0A075B615 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav4n-4A0A075B615 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Trav4n-4A0A075B615 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trav4n-4A0A075B615 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trav4n-4A0A075B615 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav4n-4A0A075B615 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav4n-4A0A075B615 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trav4n-4A0A075B615 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav4n-4A0A075B615 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trav4n-4A0A075B615 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trav4n-4A0A075B615 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trav4n-4A0A075B615 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trav4n-4A0A075B615 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trav4n-4A0A075B615 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trav4n-4A0A075B615 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC17.88■□□□□ 0.45
Trav4n-4A0A075B615 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trav4n-4A0A075B615 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trav4n-4A0A075B615 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trav4n-4A0A075B615 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav4n-4A0A075B615 Fezf2-202ENSMUST00000224023 1917 ntBASIC17.84■□□□□ 0.45
Trav4n-4A0A075B615 Zfp131-207ENSMUST00000224946 1783 ntBASIC17.84■□□□□ 0.45
Trav4n-4A0A075B615 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav4n-4A0A075B615 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav4n-4A0A075B615 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trav4n-4A0A075B615 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav4n-4A0A075B615 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trav4n-4A0A075B615 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Trav4n-4A0A075B615 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trav4n-4A0A075B615 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav4n-4A0A075B615 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC17.79■□□□□ 0.44
Trav4n-4A0A075B615 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav4n-4A0A075B615 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav4n-4A0A075B615 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trav4n-4A0A075B615 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Trav4n-4A0A075B615 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trav4n-4A0A075B615 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Trav4n-4A0A075B615 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trav4n-4A0A075B615 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Trav4n-4A0A075B615 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav4n-4A0A075B615 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC17.76■□□□□ 0.43
Trav4n-4A0A075B615 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trav4n-4A0A075B615 Amer2-203ENSMUST00000225247 2662 ntBASIC17.74■□□□□ 0.43
Trav4n-4A0A075B615 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav4n-4A0A075B615 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav4n-4A0A075B615 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
Trav4n-4A0A075B615 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Trav4n-4A0A075B615 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trav4n-4A0A075B615 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC17.71■□□□□ 0.43
Trav4n-4A0A075B615 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav4n-4A0A075B615 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trav4n-4A0A075B615 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trav4n-4A0A075B615 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trav4n-4A0A075B615 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trav4n-4A0A075B615 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trav4n-4A0A075B615 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Trav4n-4A0A075B615 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trav4n-4A0A075B615 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav4n-4A0A075B615 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trav4n-4A0A075B615 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trav4n-4A0A075B615 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trav4n-4A0A075B615 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav4n-4A0A075B615 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav4n-4A0A075B615 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC17.65■□□□□ 0.42
Trav4n-4A0A075B615 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav4n-4A0A075B615 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Trav4n-4A0A075B615 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Trav4n-4A0A075B615 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav4n-4A0A075B615 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Trav4n-4A0A075B615 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trav4n-4A0A075B615 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav4n-4A0A075B615 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav4n-4A0A075B615 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trav4n-4A0A075B615 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trav4n-4A0A075B615 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trav4n-4A0A075B615 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC17.57■□□□□ 0.4
Trav4n-4A0A075B615 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav4n-4A0A075B615 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav4n-4A0A075B615 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav4n-4A0A075B615 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav4n-4A0A075B615 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav4n-4A0A075B615 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trav4n-4A0A075B615 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 14.1 ms