Protein–RNA interactions for Protein: A0A075B5Z8

Trav6-1, T cell receptor alpha variable 6-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-1A0A075B5Z8 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC21,01■□□□□ 0,95
Trav6-1A0A075B5Z8 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0,95
Trav6-1A0A075B5Z8 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0,95
Trav6-1A0A075B5Z8 Gm9905-201ENSMUST00000065740 1845 ntBASIC21■□□□□ 0,95
Trav6-1A0A075B5Z8 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC20,99■□□□□ 0,95
Trav6-1A0A075B5Z8 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20,99■□□□□ 0,95
Trav6-1A0A075B5Z8 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC20,98■□□□□ 0,95
Trav6-1A0A075B5Z8 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC20,97■□□□□ 0,95
Trav6-1A0A075B5Z8 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC20,97■□□□□ 0,95
Trav6-1A0A075B5Z8 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC20,97■□□□□ 0,95
Trav6-1A0A075B5Z8 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC20,93■□□□□ 0,94
Trav6-1A0A075B5Z8 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC20,92■□□□□ 0,94
Trav6-1A0A075B5Z8 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC20,92■□□□□ 0,94
Trav6-1A0A075B5Z8 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC20,91■□□□□ 0,94
Trav6-1A0A075B5Z8 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC20,91■□□□□ 0,94
Trav6-1A0A075B5Z8 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC20,9■□□□□ 0,94
Trav6-1A0A075B5Z8 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20,89■□□□□ 0,93
Trav6-1A0A075B5Z8 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC20,89■□□□□ 0,93
Trav6-1A0A075B5Z8 Gm6206-201ENSMUST00000133472 2199 ntBASIC20,89■□□□□ 0,93
Trav6-1A0A075B5Z8 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC20,88■□□□□ 0,93
Trav6-1A0A075B5Z8 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC20,88■□□□□ 0,93
Trav6-1A0A075B5Z8 Mipep-204ENSMUST00000225043 1548 ntBASIC20,88■□□□□ 0,93
Trav6-1A0A075B5Z8 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC20,87■□□□□ 0,93
Trav6-1A0A075B5Z8 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC20,87■□□□□ 0,93
Trav6-1A0A075B5Z8 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC20,87■□□□□ 0,93
Trav6-1A0A075B5Z8 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC20,86■□□□□ 0,93
Trav6-1A0A075B5Z8 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC20,85■□□□□ 0,93
Trav6-1A0A075B5Z8 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC20,85■□□□□ 0,93
Trav6-1A0A075B5Z8 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC20,85■□□□□ 0,93
Trav6-1A0A075B5Z8 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC20,85■□□□□ 0,93
Trav6-1A0A075B5Z8 Zxda-201ENSMUST00000117281 2621 ntBASIC20,84■□□□□ 0,93
Trav6-1A0A075B5Z8 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC20,83■□□□□ 0,93
Trav6-1A0A075B5Z8 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC20,81■□□□□ 0,92
Trav6-1A0A075B5Z8 AL845457.1-201ENSMUST00000197244 68 ntBASIC20,81■□□□□ 0,92
Trav6-1A0A075B5Z8 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC20,8■□□□□ 0,92
Trav6-1A0A075B5Z8 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC20,8■□□□□ 0,92
Trav6-1A0A075B5Z8 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC20,8■□□□□ 0,92
Trav6-1A0A075B5Z8 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC20,79■□□□□ 0,92
Trav6-1A0A075B5Z8 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC20,78■□□□□ 0,92
Trav6-1A0A075B5Z8 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC20,78■□□□□ 0,92
Trav6-1A0A075B5Z8 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC20,78■□□□□ 0,92
Trav6-1A0A075B5Z8 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC20,77■□□□□ 0,92
Trav6-1A0A075B5Z8 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC20,77■□□□□ 0,92
Trav6-1A0A075B5Z8 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC20,76■□□□□ 0,91
Trav6-1A0A075B5Z8 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC20,76■□□□□ 0,91
Trav6-1A0A075B5Z8 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC20,75■□□□□ 0,91
Trav6-1A0A075B5Z8 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC20,75■□□□□ 0,91
Trav6-1A0A075B5Z8 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC20,74■□□□□ 0,91
Trav6-1A0A075B5Z8 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC20,74■□□□□ 0,91
Trav6-1A0A075B5Z8 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC20,73■□□□□ 0,91
Trav6-1A0A075B5Z8 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC20,73■□□□□ 0,91
Trav6-1A0A075B5Z8 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC20,72■□□□□ 0,91
Trav6-1A0A075B5Z8 Gm43445-201ENSMUST00000198564 2091 ntBASIC20,72■□□□□ 0,91
Trav6-1A0A075B5Z8 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC20,72■□□□□ 0,91
Trav6-1A0A075B5Z8 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC20,72■□□□□ 0,91
Trav6-1A0A075B5Z8 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC20,7■□□□□ 0,9
Trav6-1A0A075B5Z8 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC20,69■□□□□ 0,9
Trav6-1A0A075B5Z8 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC20,68■□□□□ 0,9
Trav6-1A0A075B5Z8 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC20,68■□□□□ 0,9
Trav6-1A0A075B5Z8 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC20,67■□□□□ 0,9
Trav6-1A0A075B5Z8 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC20,63■□□□□ 0,89
Trav6-1A0A075B5Z8 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC20,63■□□□□ 0,89
Trav6-1A0A075B5Z8 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC20,63■□□□□ 0,89
Trav6-1A0A075B5Z8 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC20,62■□□□□ 0,89
Trav6-1A0A075B5Z8 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20,62■□□□□ 0,89
Trav6-1A0A075B5Z8 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC20,61■□□□□ 0,89
Trav6-1A0A075B5Z8 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC20,58■□□□□ 0,88
Trav6-1A0A075B5Z8 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC20,57■□□□□ 0,88
Trav6-1A0A075B5Z8 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC20,57■□□□□ 0,88
Trav6-1A0A075B5Z8 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC20,56■□□□□ 0,88
Trav6-1A0A075B5Z8 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC20,55■□□□□ 0,88
Trav6-1A0A075B5Z8 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC20,55■□□□□ 0,88
Trav6-1A0A075B5Z8 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC20,54■□□□□ 0,88
Trav6-1A0A075B5Z8 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC20,51■□□□□ 0,87
Trav6-1A0A075B5Z8 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC20,5■□□□□ 0,87
Trav6-1A0A075B5Z8 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC20,5■□□□□ 0,87
Trav6-1A0A075B5Z8 Gm6345-201ENSMUST00000180378 1691 ntBASIC20,5■□□□□ 0,87
Trav6-1A0A075B5Z8 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC20,5■□□□□ 0,87
Trav6-1A0A075B5Z8 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC20,49■□□□□ 0,87
Trav6-1A0A075B5Z8 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC20,49■□□□□ 0,87
Trav6-1A0A075B5Z8 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20,47■□□□□ 0,87
Trav6-1A0A075B5Z8 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC20,46■□□□□ 0,87
Trav6-1A0A075B5Z8 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC20,46■□□□□ 0,87
Trav6-1A0A075B5Z8 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC20,44■□□□□ 0,86
Trav6-1A0A075B5Z8 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC20,43■□□□□ 0,86
Trav6-1A0A075B5Z8 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC20,43■□□□□ 0,86
Trav6-1A0A075B5Z8 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC20,42■□□□□ 0,86
Trav6-1A0A075B5Z8 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC20,42■□□□□ 0,86
Trav6-1A0A075B5Z8 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC20,42■□□□□ 0,86
Trav6-1A0A075B5Z8 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC20,41■□□□□ 0,86
Trav6-1A0A075B5Z8 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC20,4■□□□□ 0,86
Trav6-1A0A075B5Z8 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC20,39■□□□□ 0,86
Trav6-1A0A075B5Z8 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC20,38■□□□□ 0,85
Trav6-1A0A075B5Z8 Amer2-203ENSMUST00000225247 2662 ntBASIC20,38■□□□□ 0,85
Trav6-1A0A075B5Z8 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC20,38■□□□□ 0,85
Trav6-1A0A075B5Z8 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC20,37■□□□□ 0,85
Trav6-1A0A075B5Z8 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC20,37■□□□□ 0,85
Trav6-1A0A075B5Z8 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC20,37■□□□□ 0,85
Trav6-1A0A075B5Z8 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC20,37■□□□□ 0,85
Trav6-1A0A075B5Z8 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC20,37■□□□□ 0,85
Retrieved 100 of 76,532 protein–RNA pairs in 33,5 ms