Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC14.31□□□□□ -0.12
HMGA1P17096 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC14.31□□□□□ -0.12
HMGA1P17096 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC14.31□□□□□ -0.12
HMGA1P17096 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC14.31□□□□□ -0.12
HMGA1P17096 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HMGA1P17096 AC006548.2-201ENST00000605217 529 ntBASIC14.31□□□□□ -0.12
HMGA1P17096 AC012087.1-201ENST00000608068 809 ntTSL 5 BASIC14.31□□□□□ -0.12
HMGA1P17096 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC14.31□□□□□ -0.12
HMGA1P17096 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGA1P17096 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGA1P17096 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
HMGA1P17096 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC14.31□□□□□ -0.12
HMGA1P17096 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGA1P17096 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGA1P17096 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
HMGA1P17096 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGA1P17096 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HMGA1P17096 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HMGA1P17096 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC14.31□□□□□ -0.12
HMGA1P17096 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HMGA1P17096 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
HMGA1P17096 AL513497.1-201ENST00000624273 2083 ntBASIC14.3□□□□□ -0.12
HMGA1P17096 CSF3-204ENST00000394149 1583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGA1P17096 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HMGA1P17096 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC14.3□□□□□ -0.12
HMGA1P17096 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGA1P17096 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGA1P17096 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGA1P17096 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
HMGA1P17096 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HMGA1P17096 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGA1P17096 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGA1P17096 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
HMGA1P17096 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGA1P17096 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGA1P17096 PIFO-201ENST00000369737 746 ntTSL 2 BASIC14.3□□□□□ -0.12
HMGA1P17096 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGA1P17096 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
HMGA1P17096 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
HMGA1P17096 OR10N1P-201ENST00000392758 869 ntBASIC14.3□□□□□ -0.12
HMGA1P17096 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC14.3□□□□□ -0.12
HMGA1P17096 AL512288.1-201ENST00000448015 491 ntTSL 5 BASIC14.3□□□□□ -0.12
HMGA1P17096 AC244197.1-201ENST00000456494 951 ntBASIC14.3□□□□□ -0.12
HMGA1P17096 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC14.3□□□□□ -0.12
HMGA1P17096 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
HMGA1P17096 AC068831.5-201ENST00000557387 328 ntBASIC14.3□□□□□ -0.12
HMGA1P17096 DNM1P51-201ENST00000558149 522 ntBASIC14.3□□□□□ -0.12
HMGA1P17096 AC023968.2-201ENST00000560593 1049 ntBASIC14.3□□□□□ -0.12
HMGA1P17096 RPS5-204ENST00000598098 536 ntTSL 2 BASIC14.3□□□□□ -0.12
HMGA1P17096 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC14.3□□□□□ -0.12
HMGA1P17096 AC113385.2-201ENST00000614465 762 ntBASIC14.3□□□□□ -0.12
HMGA1P17096 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
HMGA1P17096 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.3□□□□□ -0.12
HMGA1P17096 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC14.3□□□□□ -0.12
HMGA1P17096 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC14.3□□□□□ -0.12
HMGA1P17096 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGA1P17096 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGA1P17096 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HMGA1P17096 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGA1P17096 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
HMGA1P17096 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGA1P17096 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.3□□□□□ -0.12
HMGA1P17096 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC14.29□□□□□ -0.12
HMGA1P17096 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 UCKL1-AS1-201ENST00000623569 3602 ntBASIC14.29□□□□□ -0.12
HMGA1P17096 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC14.29□□□□□ -0.12
HMGA1P17096 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.29□□□□□ -0.12
HMGA1P17096 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.29□□□□□ -0.12
HMGA1P17096 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 RNA5SP491-201ENST00000362936 118 ntBASIC14.29□□□□□ -0.12
HMGA1P17096 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC14.29□□□□□ -0.12
HMGA1P17096 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
HMGA1P17096 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC14.29□□□□□ -0.12
HMGA1P17096 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC14.29□□□□□ -0.12
HMGA1P17096 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
HMGA1P17096 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC14.29□□□□□ -0.12
HMGA1P17096 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC14.29□□□□□ -0.12
HMGA1P17096 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC14.29□□□□□ -0.12
HMGA1P17096 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC14.29□□□□□ -0.12
HMGA1P17096 GDNF-207ENST00000515058 764 ntTSL 5 BASIC14.29□□□□□ -0.12
HMGA1P17096 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC14.29□□□□□ -0.12
HMGA1P17096 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
HMGA1P17096 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 SAA2-206ENST00000530400 323 ntTSL 3 BASIC14.29□□□□□ -0.12
HMGA1P17096 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC14.29□□□□□ -0.12
HMGA1P17096 RN7SL596P-201ENST00000582123 288 ntBASIC14.29□□□□□ -0.12
HMGA1P17096 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HMGA1P17096 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC14.29□□□□□ -0.12
HMGA1P17096 TYMSP2-201ENST00000589501 424 ntBASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms