Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC16.28■□□□□ 0.2
RHBDL3P58872 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RHBDL3P58872 SAA2-206ENST00000530400 323 ntTSL 3 BASIC16.28■□□□□ 0.2
RHBDL3P58872 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC16.28■□□□□ 0.2
RHBDL3P58872 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC16.28■□□□□ 0.2
RHBDL3P58872 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC16.28■□□□□ 0.2
RHBDL3P58872 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC16.28■□□□□ 0.2
RHBDL3P58872 NAA38-204ENST00000575208 529 ntTSL 3 BASIC16.28■□□□□ 0.2
RHBDL3P58872 Metazoa_SRP.141-201ENST00000615072 282 ntBASIC16.28■□□□□ 0.2
RHBDL3P58872 AC137723.2-201ENST00000623540 398 ntBASIC16.28■□□□□ 0.2
RHBDL3P58872 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC16.28■□□□□ 0.2
RHBDL3P58872 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC16.28■□□□□ 0.2
RHBDL3P58872 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC16.28■□□□□ 0.2
RHBDL3P58872 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RHBDL3P58872 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RHBDL3P58872 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC16.28■□□□□ 0.2
RHBDL3P58872 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RHBDL3P58872 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RHBDL3P58872 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC16.28■□□□□ 0.2
RHBDL3P58872 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC16.28■□□□□ 0.2
RHBDL3P58872 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RHBDL3P58872 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC16.28■□□□□ 0.2
RHBDL3P58872 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC16.28■□□□□ 0.2
RHBDL3P58872 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RHBDL3P58872 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
RHBDL3P58872 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
RHBDL3P58872 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RHBDL3P58872 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.27■□□□□ 0.2
RHBDL3P58872 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RHBDL3P58872 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RHBDL3P58872 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RHBDL3P58872 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RHBDL3P58872 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RHBDL3P58872 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
RHBDL3P58872 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
RHBDL3P58872 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RHBDL3P58872 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RHBDL3P58872 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
RHBDL3P58872 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC16.27■□□□□ 0.2
RHBDL3P58872 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RHBDL3P58872 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC16.27■□□□□ 0.2
RHBDL3P58872 HNRNPA1P21-201ENST00000424115 961 ntBASIC16.27■□□□□ 0.2
RHBDL3P58872 GOLGA6L16P-201ENST00000441780 1299 ntBASIC16.27■□□□□ 0.2
RHBDL3P58872 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC16.27■□□□□ 0.2
RHBDL3P58872 DDX39AP1-201ENST00000445147 1181 ntBASIC16.27■□□□□ 0.2
RHBDL3P58872 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RHBDL3P58872 RNF146-211ENST00000609447 607 ntTSL 4 BASIC16.27■□□□□ 0.2
RHBDL3P58872 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
RHBDL3P58872 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RHBDL3P58872 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RHBDL3P58872 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC16.27■□□□□ 0.19
RHBDL3P58872 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC16.27■□□□□ 0.19
RHBDL3P58872 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.19
RHBDL3P58872 LINC00969-231ENST00000597482 1476 ntTSL 5 BASIC16.27■□□□□ 0.19
RHBDL3P58872 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC16.27■□□□□ 0.19
RHBDL3P58872 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
RHBDL3P58872 AC026748.1-201ENST00000624349 3251 ntBASIC16.27■□□□□ 0.19
RHBDL3P58872 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC16.26■□□□□ 0.19
RHBDL3P58872 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC16.26■□□□□ 0.19
RHBDL3P58872 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RHBDL3P58872 AC117489.1-201ENST00000625169 3217 ntBASIC16.26■□□□□ 0.19
RHBDL3P58872 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC16.26■□□□□ 0.19
RHBDL3P58872 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC16.26■□□□□ 0.19
RHBDL3P58872 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
RHBDL3P58872 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
RHBDL3P58872 AL928921.2-201ENST00000641325 2442 ntBASIC16.26■□□□□ 0.19
RHBDL3P58872 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RHBDL3P58872 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
RHBDL3P58872 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RHBDL3P58872 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
RHBDL3P58872 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
RHBDL3P58872 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RHBDL3P58872 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RHBDL3P58872 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RHBDL3P58872 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
RHBDL3P58872 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RHBDL3P58872 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
RHBDL3P58872 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RHBDL3P58872 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
RHBDL3P58872 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC16.26■□□□□ 0.19
RHBDL3P58872 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC16.26■□□□□ 0.19
RHBDL3P58872 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC16.26■□□□□ 0.19
RHBDL3P58872 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC16.26■□□□□ 0.19
RHBDL3P58872 FAM86KP-201ENST00000509817 987 ntBASIC16.26■□□□□ 0.19
RHBDL3P58872 PIGCP1-201ENST00000527583 895 ntBASIC16.26■□□□□ 0.19
RHBDL3P58872 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC16.26■□□□□ 0.19
RHBDL3P58872 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC16.26■□□□□ 0.19
RHBDL3P58872 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RHBDL3P58872 KF455155.1-201ENST00000604493 303 ntBASIC16.26■□□□□ 0.19
RHBDL3P58872 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RHBDL3P58872 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
RHBDL3P58872 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC16.26■□□□□ 0.19
RHBDL3P58872 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
RHBDL3P58872 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
RHBDL3P58872 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RHBDL3P58872 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RHBDL3P58872 AC007431.1-201ENST00000578662 1412 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RHBDL3P58872 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RHBDL3P58872 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RHBDL3P58872 TMEM78-201ENST00000323223 2175 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms