Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb3O54879 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb3O54879 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb3O54879 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC16.68■□□□□ 0.26
Hmgb3O54879 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb3O54879 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb3O54879 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb3O54879 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Hmgb3O54879 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb3O54879 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC16.67■□□□□ 0.26
Hmgb3O54879 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb3O54879 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC16.67■□□□□ 0.26
Hmgb3O54879 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Hmgb3O54879 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb3O54879 Gm10461-201ENSMUST00000202073 4786 ntBASIC16.67■□□□□ 0.26
Hmgb3O54879 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb3O54879 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb3O54879 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Hmgb3O54879 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Hmgb3O54879 Gm15043-201ENSMUST00000118843 1543 ntBASIC16.66■□□□□ 0.26
Hmgb3O54879 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Hmgb3O54879 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
Hmgb3O54879 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Hmgb3O54879 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Hmgb3O54879 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Hmgb3O54879 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Hmgb3O54879 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Hmgb3O54879 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Hmgb3O54879 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Hmgb3O54879 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
Hmgb3O54879 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb3O54879 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb3O54879 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb3O54879 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb3O54879 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Hmgb3O54879 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC16.65■□□□□ 0.26
Hmgb3O54879 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb3O54879 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb3O54879 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Hmgb3O54879 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC16.64■□□□□ 0.26
Hmgb3O54879 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.26
Hmgb3O54879 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Hmgb3O54879 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb3O54879 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb3O54879 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb3O54879 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb3O54879 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb3O54879 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb3O54879 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb3O54879 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC16.64■□□□□ 0.25
Hmgb3O54879 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC16.64■□□□□ 0.25
Hmgb3O54879 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb3O54879 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb3O54879 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
Hmgb3O54879 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
Hmgb3O54879 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Hmgb3O54879 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC16.63■□□□□ 0.25
Hmgb3O54879 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb3O54879 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb3O54879 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb3O54879 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Hmgb3O54879 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC16.63■□□□□ 0.25
Hmgb3O54879 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC16.63■□□□□ 0.25
Hmgb3O54879 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb3O54879 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb3O54879 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb3O54879 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb3O54879 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Hmgb3O54879 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Hmgb3O54879 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC16.62■□□□□ 0.25
Hmgb3O54879 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Hmgb3O54879 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Hmgb3O54879 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Hmgb3O54879 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Hmgb3O54879 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC16.62■□□□□ 0.25
Hmgb3O54879 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Hmgb3O54879 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Hmgb3O54879 Gm43545-201ENSMUST00000196765 2779 ntBASIC16.62■□□□□ 0.25
Hmgb3O54879 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Hmgb3O54879 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Hmgb3O54879 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Hmgb3O54879 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Hmgb3O54879 Gm5987-201ENSMUST00000196433 1151 ntBASIC16.61■□□□□ 0.25
Hmgb3O54879 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC16.61■□□□□ 0.25
Hmgb3O54879 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Hmgb3O54879 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Hmgb3O54879 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
Hmgb3O54879 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb3O54879 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb3O54879 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
Hmgb3O54879 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Hmgb3O54879 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb3O54879 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb3O54879 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb3O54879 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
Hmgb3O54879 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC16.6■□□□□ 0.25
Hmgb3O54879 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb3O54879 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb3O54879 Gm5913-201ENSMUST00000119397 1399 ntBASIC16.6■□□□□ 0.25
Hmgb3O54879 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC16.6■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 50.5 ms