Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 BTRC-202ENST00000370187 6134 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 AL022313.4-201ENST00000562756 2046 ntBASIC12.23□□□□□ -0.45
SDCBPO00560 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
SDCBPO00560 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC12.23□□□□□ -0.45
SDCBPO00560 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC12.23□□□□□ -0.45
SDCBPO00560 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC12.23□□□□□ -0.45
SDCBPO00560 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC12.23□□□□□ -0.45
SDCBPO00560 GUK1-206ENST00000366723 845 ntTSL 5 BASIC12.23□□□□□ -0.45
SDCBPO00560 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
SDCBPO00560 AC005229.1-201ENST00000392885 409 ntBASIC12.23□□□□□ -0.45
SDCBPO00560 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC12.23□□□□□ -0.45
SDCBPO00560 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC12.23□□□□□ -0.45
SDCBPO00560 TTTY23B-201ENST00000442790 549 ntBASIC12.23□□□□□ -0.45
SDCBPO00560 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC12.23□□□□□ -0.45
SDCBPO00560 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC12.23□□□□□ -0.45
SDCBPO00560 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC12.23□□□□□ -0.45
SDCBPO00560 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC12.23□□□□□ -0.45
SDCBPO00560 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC12.23□□□□□ -0.45
SDCBPO00560 RPSAP52-203ENST00000622976 1023 ntBASIC12.23□□□□□ -0.45
SDCBPO00560 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC12.23□□□□□ -0.45
SDCBPO00560 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC12.23□□□□□ -0.45
SDCBPO00560 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC12.23□□□□□ -0.45
SDCBPO00560 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC12.23□□□□□ -0.45
SDCBPO00560 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
SDCBPO00560 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC12.23□□□□□ -0.45
SDCBPO00560 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
SDCBPO00560 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
SDCBPO00560 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
SDCBPO00560 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
SDCBPO00560 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC12.23□□□□□ -0.45
SDCBPO00560 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
SDCBPO00560 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
SDCBPO00560 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC12.23□□□□□ -0.45
SDCBPO00560 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
SDCBPO00560 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC12.22□□□□□ -0.45
SDCBPO00560 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
SDCBPO00560 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC12.22□□□□□ -0.45
SDCBPO00560 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 OS9-218ENST00000551035 2246 ntTSL 2 BASIC12.22□□□□□ -0.45
SDCBPO00560 F10-203ENST00000409306 1450 ntTSL 3 BASIC12.22□□□□□ -0.45
SDCBPO00560 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 FAM122B-203ENST00000370790 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 ZBTB12BP-201ENST00000314232 1122 ntBASIC12.22□□□□□ -0.45
SDCBPO00560 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC12.22□□□□□ -0.45
SDCBPO00560 BCRP2-202ENST00000447763 634 ntBASIC12.22□□□□□ -0.45
SDCBPO00560 INE1-201ENST00000456273 945 ntBASIC12.22□□□□□ -0.45
SDCBPO00560 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
SDCBPO00560 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC12.22□□□□□ -0.45
SDCBPO00560 BCRP6-201ENST00000510112 632 ntBASIC12.22□□□□□ -0.45
SDCBPO00560 BCRP7-201ENST00000511549 544 ntBASIC12.22□□□□□ -0.45
SDCBPO00560 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
SDCBPO00560 SLC25A47P1-201ENST00000531577 414 ntBASIC12.22□□□□□ -0.45
SDCBPO00560 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC12.22□□□□□ -0.45
SDCBPO00560 AC025279.2-201ENST00000569730 653 ntBASIC12.22□□□□□ -0.45
SDCBPO00560 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC12.22□□□□□ -0.45
SDCBPO00560 ECM1P1-201ENST00000604092 1279 ntBASIC12.22□□□□□ -0.45
SDCBPO00560 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
SDCBPO00560 AL022328.1-201ENST00000610050 478 ntBASIC12.22□□□□□ -0.45
SDCBPO00560 ETV2-208ENST00000621247 941 ntTSL 5 BASIC12.22□□□□□ -0.45
SDCBPO00560 AC132938.4-201ENST00000623835 848 ntBASIC12.22□□□□□ -0.45
SDCBPO00560 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC12.22□□□□□ -0.45
SDCBPO00560 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 MIR193BHG-211ENST00000641433 5365 ntBASIC12.22□□□□□ -0.45
SDCBPO00560 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
SDCBPO00560 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms