Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDAC4P56524 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDAC4P56524 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDAC4P56524 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDAC4P56524 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDAC4P56524 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC14.97□□□□□ -0.01
HDAC4P56524 AL359881.3-201ENST00000602640 1721 ntBASIC14.97□□□□□ -0.01
HDAC4P56524 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HDAC4P56524 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
HDAC4P56524 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC14.97□□□□□ -0.01
HDAC4P56524 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.96□□□□□ -0.01
HDAC4P56524 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
HDAC4P56524 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC14.96□□□□□ -0.01
HDAC4P56524 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HDAC4P56524 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HDAC4P56524 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HDAC4P56524 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC14.96□□□□□ -0.01
HDAC4P56524 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HDAC4P56524 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HDAC4P56524 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
HDAC4P56524 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC14.96□□□□□ -0.01
HDAC4P56524 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HDAC4P56524 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HDAC4P56524 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC14.96□□□□□ -0.01
HDAC4P56524 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HDAC4P56524 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
HDAC4P56524 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC14.96□□□□□ -0.01
HDAC4P56524 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HDAC4P56524 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
HDAC4P56524 HNRNPA1P32-201ENST00000396326 963 ntBASIC14.96□□□□□ -0.01
HDAC4P56524 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC14.96□□□□□ -0.01
HDAC4P56524 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC14.96□□□□□ -0.01
HDAC4P56524 TMEM198B-204ENST00000484016 896 ntBASIC14.96□□□□□ -0.01
HDAC4P56524 MARK2P5-201ENST00000507649 634 ntBASIC14.96□□□□□ -0.01
HDAC4P56524 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
HDAC4P56524 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC14.96□□□□□ -0.01
HDAC4P56524 MIR4538-201ENST00000581377 78 ntBASIC14.96□□□□□ -0.01
HDAC4P56524 RN7SL219P-201ENST00000582872 296 ntBASIC14.96□□□□□ -0.01
HDAC4P56524 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC14.96□□□□□ -0.01
HDAC4P56524 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HDAC4P56524 AL157813.1-201ENST00000612996 587 ntBASIC14.96□□□□□ -0.01
HDAC4P56524 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC14.96□□□□□ -0.01
HDAC4P56524 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC14.96□□□□□ -0.01
HDAC4P56524 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
HDAC4P56524 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC14.96□□□□□ -0.01
HDAC4P56524 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HDAC4P56524 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HDAC4P56524 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HDAC4P56524 AGAP10P-201ENST00000454844 2418 ntBASIC14.96□□□□□ -0.01
HDAC4P56524 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HDAC4P56524 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HDAC4P56524 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
HDAC4P56524 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HDAC4P56524 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC14.96□□□□□ -0.01
HDAC4P56524 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC14.96□□□□□ -0.02
HDAC4P56524 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
HDAC4P56524 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.96□□□□□ -0.02
HDAC4P56524 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
HDAC4P56524 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.02
HDAC4P56524 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
HDAC4P56524 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.02
HDAC4P56524 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
HDAC4P56524 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HDAC4P56524 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HDAC4P56524 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HDAC4P56524 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HDAC4P56524 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
HDAC4P56524 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
HDAC4P56524 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
HDAC4P56524 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
HDAC4P56524 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
HDAC4P56524 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HDAC4P56524 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HDAC4P56524 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
HDAC4P56524 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
HDAC4P56524 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC14.95□□□□□ -0.02
HDAC4P56524 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HDAC4P56524 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HDAC4P56524 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HDAC4P56524 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
HDAC4P56524 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC14.95□□□□□ -0.02
HDAC4P56524 AC007274.1-201ENST00000439805 662 ntBASIC14.95□□□□□ -0.02
HDAC4P56524 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC14.95□□□□□ -0.02
HDAC4P56524 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC14.95□□□□□ -0.02
HDAC4P56524 AL512310.5-201ENST00000551999 515 ntBASIC14.95□□□□□ -0.02
HDAC4P56524 AC140658.4-201ENST00000561990 352 ntBASIC14.95□□□□□ -0.02
HDAC4P56524 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC14.95□□□□□ -0.02
HDAC4P56524 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC14.95□□□□□ -0.02
HDAC4P56524 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC14.95□□□□□ -0.02
HDAC4P56524 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
HDAC4P56524 AL451050.2-201ENST00000606967 682 ntBASIC14.95□□□□□ -0.02
HDAC4P56524 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
HDAC4P56524 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HDAC4P56524 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HDAC4P56524 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HDAC4P56524 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC14.95□□□□□ -0.02
HDAC4P56524 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
HDAC4P56524 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
HDAC4P56524 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC14.95□□□□□ -0.02
HDAC4P56524 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms