Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 YBL113W-AYBL113W-A 483 nt3.94□□□□□ -1.78
CUP9P41817 CDC21YOR074C 915 nt3.94□□□□□ -1.78
CUP9P41817 YOR396C-AYOR396C-A 483 nt3.94□□□□□ -1.78
CUP9P41817 YPL283W-BYPL283W-B 483 nt3.94□□□□□ -1.78
CUP9P41817 YPR204C-AYPR204C-A 483 nt3.94□□□□□ -1.78
CUP9P41817 URA7YBL039C 1740 nt3.94□□□□□ -1.78
CUP9P41817 PHM7YOL084W 2976 nt3.93□□□□□ -1.78
CUP9P41817 YTA12YMR089C 2478 nt3.93□□□□□ -1.78
CUP9P41817 NUP42YDR192C 1293 nt3.93□□□□□ -1.78
CUP9P41817 RIP1YEL024W 648 nt3.93□□□□□ -1.78
CUP9P41817 ADK2YER170W 678 nt3.93□□□□□ -1.78
CUP9P41817 RNA15YGL044C 891 nt3.93□□□□□ -1.78
CUP9P41817 YHL049CYHL049C 816 nt3.93□□□□□ -1.78
CUP9P41817 TEF4YKL081W 1239 nt3.93□□□□□ -1.78
CUP9P41817 RRP40YOL142W 723 nt3.93□□□□□ -1.78
CUP9P41817 snR19snR19 568 nt3.93□□□□□ -1.78
CUP9P41817 KIN2YLR096W 3444 nt3.93□□□□□ -1.78
CUP9P41817 THS1YIL078W 2205 nt3.93□□□□□ -1.78
CUP9P41817 NKP2YLR315W 462 nt3.92□□□□□ -1.78
CUP9P41817 YIM1YMR152W 1098 nt3.92□□□□□ -1.78
CUP9P41817 DSC2YOL073C 969 nt3.92□□□□□ -1.78
CUP9P41817 SPO19YPL130W 672 nt3.92□□□□□ -1.78
CUP9P41817 HXT7YDR342C 1713 nt3.92□□□□□ -1.78
CUP9P41817 HXT6YDR343C 1713 nt3.92□□□□□ -1.78
CUP9P41817 SNF11YDR073W 510 nt3.91□□□□□ -1.78
CUP9P41817 TFB3YDR460W 966 nt3.91□□□□□ -1.78
CUP9P41817 SWC3YAL011W 1878 nt3.91□□□□□ -1.78
CUP9P41817 JHD2YJR119C 2187 nt3.91□□□□□ -1.78
CUP9P41817 YMR030W-AYMR030W-A 291 nt3.91□□□□□ -1.78
CUP9P41817 PDX3YBR035C 687 nt3.91□□□□□ -1.78
CUP9P41817 GDT1YBR187W 843 nt3.91□□□□□ -1.78
CUP9P41817 LYS2YBR115C 4179 nt3.91□□□□□ -1.78
CUP9P41817 HIS4YCL030C 2400 nt3.91□□□□□ -1.78
CUP9P41817 YGR266WYGR266W 2106 nt3.91□□□□□ -1.78
CUP9P41817 APE1YKL103C 1545 nt3.9□□□□□ -1.78
CUP9P41817 CAB3YKL088W 1716 nt3.9□□□□□ -1.78
CUP9P41817 CNM67YNL225C 1746 nt3.9□□□□□ -1.78
CUP9P41817 VHC1YBR235W 3363 nt3.9□□□□□ -1.78
CUP9P41817 DPB4YDR121W 591 nt3.9□□□□□ -1.79
CUP9P41817 SUR2YDR297W 1050 nt3.9□□□□□ -1.79
CUP9P41817 REV7YIL139C 738 nt3.9□□□□□ -1.79
CUP9P41817 NTR2YKR022C 969 nt3.9□□□□□ -1.79
CUP9P41817 LEU1YGL009C 2340 nt3.9□□□□□ -1.79
CUP9P41817 ZPR1YGR211W 1461 nt3.9□□□□□ -1.79
CUP9P41817 MEC3YLR288C 1425 nt3.89□□□□□ -1.79
CUP9P41817 TMA17YDL110C 453 nt3.89□□□□□ -1.79
CUP9P41817 ASP1YDR321W 1146 nt3.89□□□□□ -1.79
CUP9P41817 SKI6YGR195W 741 nt3.89□□□□□ -1.79
CUP9P41817 FMP33YJL161W 543 nt3.89□□□□□ -1.79
CUP9P41817 YML031C-AYML031C-A 336 nt3.89□□□□□ -1.79
CUP9P41817 AST1YBL069W 1290 nt3.89□□□□□ -1.79
CUP9P41817 VPS68YOL129W 555 nt3.89□□□□□ -1.79
CUP9P41817 RDL1YOR285W 420 nt3.89□□□□□ -1.79
CUP9P41817 TIP41YPR040W 1071 nt3.89□□□□□ -1.79
CUP9P41817 YER158CYER158C 1722 nt3.89□□□□□ -1.79
CUP9P41817 HOT1YMR172W 2160 nt3.89□□□□□ -1.79
CUP9P41817 MCM4YPR019W 2802 nt3.89□□□□□ -1.79
CUP9P41817 GDE1YPL110C 3672 nt3.89□□□□□ -1.79
CUP9P41817 FLO8YER109C 2400 nt3.89□□□□□ -1.79
CUP9P41817 MNN4YKL201C 3537 nt3.88□□□□□ -1.79
CUP9P41817 MPH2YDL247W 1830 nt3.88□□□□□ -1.79
CUP9P41817 KAP114YGL241W 3015 nt3.88□□□□□ -1.79
CUP9P41817 RSM10YDR041W 612 nt3.88□□□□□ -1.79
CUP9P41817 AIM7YDR063W 450 nt3.88□□□□□ -1.79
CUP9P41817 MRPL3YMR024W 1173 nt3.88□□□□□ -1.79
CUP9P41817 ARC40YBR234C 1155 nt3.88□□□□□ -1.79
CUP9P41817 YCL021W-AYCL021W-A 378 nt3.88□□□□□ -1.79
CUP9P41817 YIL001WYIL001W 1542 nt3.88□□□□□ -1.79
CUP9P41817 IMD2YHR216W 1572 nt3.88□□□□□ -1.79
CUP9P41817 THI20YOL055C 1656 nt3.87□□□□□ -1.79
CUP9P41817 HRK1YOR267C 2280 nt3.87□□□□□ -1.79
CUP9P41817 MIC26YGR235C 702 nt3.87□□□□□ -1.79
CUP9P41817 SAC1YKL212W 1872 nt3.87□□□□□ -1.79
CUP9P41817 TRM44YPL030W 1704 nt3.87□□□□□ -1.79
CUP9P41817 MAL13YGR288W 1422 nt3.87□□□□□ -1.79
CUP9P41817 ADP1YCR011C 3150 nt3.86□□□□□ -1.79
CUP9P41817 ESF1YDR365C 1887 nt3.86□□□□□ -1.79
CUP9P41817 PAH1YMR165C 2589 nt3.86□□□□□ -1.79
CUP9P41817 GIP1YBR045C 1920 nt3.86□□□□□ -1.79
CUP9P41817 YHR095WYHR095W 495 nt3.86□□□□□ -1.79
CUP9P41817 UTP11YKL099C 753 nt3.86□□□□□ -1.79
CUP9P41817 SNF8YPL002C 702 nt3.86□□□□□ -1.79
CUP9P41817 YPL113CYPL113C 1191 nt3.86□□□□□ -1.79
CUP9P41817 RPL19AYBR084C-A 570 nt3.86□□□□□ -1.79
CUP9P41817 EAR1YMR171C 1653 nt3.86□□□□□ -1.79
CUP9P41817 TPO2YGR138C 1845 nt3.86□□□□□ -1.79
CUP9P41817 PRD1YCL057W 2139 nt3.85□□□□□ -1.79
CUP9P41817 snR7-SsnR7-S 179 nt3.85□□□□□ -1.79
CUP9P41817 API2YDR525W 330 nt3.85□□□□□ -1.79
CUP9P41817 tK(CUU)CtK(CUU)C 73 nt3.85□□□□□ -1.79
CUP9P41817 tK(CUU)D1tK(CUU)D1 73 nt3.85□□□□□ -1.79
CUP9P41817 tK(CUU)D2tK(CUU)D2 73 nt3.85□□□□□ -1.79
CUP9P41817 tK(CUU)E1tK(CUU)E1 73 nt3.85□□□□□ -1.79
CUP9P41817 tK(CUU)E2tK(CUU)E2 73 nt3.85□□□□□ -1.79
CUP9P41817 tK(CUU)FtK(CUU)F 73 nt3.85□□□□□ -1.79
CUP9P41817 tK(CUU)G1tK(CUU)G1 73 nt3.85□□□□□ -1.79
CUP9P41817 tK(CUU)G2tK(CUU)G2 73 nt3.85□□□□□ -1.79
CUP9P41817 tK(CUU)G3tK(CUU)G3 73 nt3.85□□□□□ -1.79
CUP9P41817 tK(CUU)ItK(CUU)I 73 nt3.85□□□□□ -1.79
CUP9P41817 tK(CUU)JtK(CUU)J 73 nt3.85□□□□□ -1.79
Retrieved 100 of 7,029 protein–RNA pairs in 10.6 ms