Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CLIP3Q96DZ5 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 ZBTB49-201ENST00000337872 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 AJ011931.1-201ENST00000618749 2492 ntBASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 PEG13-201ENST00000631594 5667 ntBASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 CYP46A4P-201ENST00000414953 267 ntBASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 KRTAP19-9P-201ENST00000421795 191 ntBASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 AC012441.2-201ENST00000444843 739 ntBASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 RN7SL11P-201ENST00000471305 293 ntBASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 SYT17-208ENST00000568433 812 ntTSL 3 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 AC132192.2-201ENST00000596206 1147 ntBASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 AMT-239ENST00000636865 1914 ntTSL 5 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLIP3Q96DZ5 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 C12orf43-202ENST00000445832 2397 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 AC138969.2-201ENST00000532739 9932 ntBASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 FAM118A-201ENST00000216214 3458 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 SKA2-202ENST00000437036 625 ntTSL 2 BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 AL133466.1-201ENST00000447582 150 ntBASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 AC022217.1-201ENST00000521069 738 ntBASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 SDHD-202ENST00000525291 790 ntTSL 3 BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 AC008805.1-201ENST00000590892 364 ntBASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 AC009884.2-201ENST00000603110 324 ntBASIC14.04□□□□□ -0.16
CLIP3Q96DZ5 AC090164.2-201ENST00000611487 516 ntBASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms