Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
RFX3P48380 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC13.75□□□□□ -0.21
RFX3P48380 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
RFX3P48380 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
RFX3P48380 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC13.75□□□□□ -0.21
RFX3P48380 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC13.75□□□□□ -0.21
RFX3P48380 KLF2P4-201ENST00000451959 1225 ntBASIC13.75□□□□□ -0.21
RFX3P48380 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC13.75□□□□□ -0.21
RFX3P48380 COX5BP1-201ENST00000507622 393 ntBASIC13.75□□□□□ -0.21
RFX3P48380 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC13.75□□□□□ -0.21
RFX3P48380 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC13.75□□□□□ -0.21
RFX3P48380 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC13.75□□□□□ -0.21
RFX3P48380 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC13.75□□□□□ -0.21
RFX3P48380 AC106820.3-201ENST00000561653 397 ntBASIC13.75□□□□□ -0.21
RFX3P48380 RPS24-214ENST00000613865 538 ntTSL 5 BASIC13.75□□□□□ -0.21
RFX3P48380 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC13.75□□□□□ -0.21
RFX3P48380 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
RFX3P48380 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
RFX3P48380 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC13.75□□□□□ -0.21
RFX3P48380 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
RFX3P48380 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC13.75□□□□□ -0.21
RFX3P48380 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
RFX3P48380 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
RFX3P48380 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RFX3P48380 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC13.74□□□□□ -0.21
RFX3P48380 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
RFX3P48380 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
RFX3P48380 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RFX3P48380 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
RFX3P48380 KRT8P4-201ENST00000509735 1454 ntBASIC13.74□□□□□ -0.21
RFX3P48380 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC13.74□□□□□ -0.21
RFX3P48380 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RFX3P48380 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RFX3P48380 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
RFX3P48380 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
RFX3P48380 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC13.74□□□□□ -0.21
RFX3P48380 AC010327.5-201ENST00000586923 3061 ntBASIC13.74□□□□□ -0.21
RFX3P48380 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC13.74□□□□□ -0.21
RFX3P48380 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC13.74□□□□□ -0.21
RFX3P48380 SNX21-203ENST00000372541 771 ntTSL 2 BASIC13.74□□□□□ -0.21
RFX3P48380 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC13.74□□□□□ -0.21
RFX3P48380 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
RFX3P48380 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RFX3P48380 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
RFX3P48380 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RFX3P48380 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC13.74□□□□□ -0.21
RFX3P48380 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC13.74□□□□□ -0.21
RFX3P48380 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC13.74□□□□□ -0.21
RFX3P48380 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RFX3P48380 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC13.74□□□□□ -0.21
RFX3P48380 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC13.74□□□□□ -0.21
RFX3P48380 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
RFX3P48380 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC13.74□□□□□ -0.21
RFX3P48380 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC13.74□□□□□ -0.21
RFX3P48380 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC13.74□□□□□ -0.21
RFX3P48380 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC13.74□□□□□ -0.21
RFX3P48380 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC13.74□□□□□ -0.21
RFX3P48380 HILS1-202ENST00000545329 423 ntBASIC13.74□□□□□ -0.21
RFX3P48380 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC13.74□□□□□ -0.21
RFX3P48380 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC13.74□□□□□ -0.21
RFX3P48380 AL512343.1-201ENST00000605837 169 ntBASIC13.74□□□□□ -0.21
RFX3P48380 AC006453.4-201ENST00000636949 1252 ntBASIC13.74□□□□□ -0.21
RFX3P48380 NIN-206ENST00000453196 6785 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
RFX3P48380 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
RFX3P48380 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC13.74□□□□□ -0.21
RFX3P48380 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
RFX3P48380 AGGF1P1-201ENST00000509500 2073 ntBASIC13.74□□□□□ -0.21
RFX3P48380 AC027601.5-201ENST00000624065 2482 ntBASIC13.74□□□□□ -0.21
RFX3P48380 CEP85L-203ENST00000368491 7673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
RFX3P48380 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
RFX3P48380 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RFX3P48380 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
RFX3P48380 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RFX3P48380 TKT-201ENST00000296289 1931 ntTSL 5 BASIC13.74□□□□□ -0.21
RFX3P48380 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.74□□□□□ -0.21
RFX3P48380 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
RFX3P48380 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
RFX3P48380 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RFX3P48380 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
RFX3P48380 MPI-203ENST00000535694 1523 ntTSL 2 BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms