Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.72■■□□□ 1.07
TRIM40Q6P9F5 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.72■■□□□ 1.07
TRIM40Q6P9F5 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM40Q6P9F5 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.71■■□□□ 1.07
TRIM40Q6P9F5 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM40Q6P9F5 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.71■■□□□ 1.07
TRIM40Q6P9F5 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.71■■□□□ 1.07
TRIM40Q6P9F5 MIR6722-201ENST00000617286 78 ntBASIC21.71■■□□□ 1.07
TRIM40Q6P9F5 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.71■■□□□ 1.07
TRIM40Q6P9F5 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM40Q6P9F5 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM40Q6P9F5 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.71■■□□□ 1.07
TRIM40Q6P9F5 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.71■■□□□ 1.07
TRIM40Q6P9F5 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.71■■□□□ 1.07
TRIM40Q6P9F5 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM40Q6P9F5 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM40Q6P9F5 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
TRIM40Q6P9F5 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
TRIM40Q6P9F5 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
TRIM40Q6P9F5 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM40Q6P9F5 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.7■■□□□ 1.06
TRIM40Q6P9F5 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
TRIM40Q6P9F5 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM40Q6P9F5 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM40Q6P9F5 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM40Q6P9F5 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.7■■□□□ 1.06
TRIM40Q6P9F5 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM40Q6P9F5 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM40Q6P9F5 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM40Q6P9F5 TSPY9P-201ENST00000440215 945 ntBASIC21.7■■□□□ 1.06
TRIM40Q6P9F5 TSPY11P-201ENST00000442607 1045 ntBASIC21.7■■□□□ 1.06
TRIM40Q6P9F5 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM40Q6P9F5 DUSP8P5-201ENST00000422884 1815 ntBASIC21.7■■□□□ 1.06
TRIM40Q6P9F5 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM40Q6P9F5 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM40Q6P9F5 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM40Q6P9F5 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
TRIM40Q6P9F5 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM40Q6P9F5 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.7■■□□□ 1.06
TRIM40Q6P9F5 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
TRIM40Q6P9F5 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.69■■□□□ 1.06
TRIM40Q6P9F5 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM40Q6P9F5 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM40Q6P9F5 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM40Q6P9F5 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM40Q6P9F5 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.69■■□□□ 1.06
TRIM40Q6P9F5 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM40Q6P9F5 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM40Q6P9F5 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM40Q6P9F5 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.69■■□□□ 1.06
TRIM40Q6P9F5 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.69■■□□□ 1.06
TRIM40Q6P9F5 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.69■■□□□ 1.06
TRIM40Q6P9F5 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM40Q6P9F5 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.68■■□□□ 1.06
TRIM40Q6P9F5 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM40Q6P9F5 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.68■■□□□ 1.06
TRIM40Q6P9F5 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM40Q6P9F5 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.68■■□□□ 1.06
TRIM40Q6P9F5 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.68■■□□□ 1.06
TRIM40Q6P9F5 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM40Q6P9F5 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM40Q6P9F5 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM40Q6P9F5 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM40Q6P9F5 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.67■■□□□ 1.06
TRIM40Q6P9F5 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM40Q6P9F5 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.67■■□□□ 1.06
TRIM40Q6P9F5 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.67■■□□□ 1.06
TRIM40Q6P9F5 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.67■■□□□ 1.06
TRIM40Q6P9F5 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
TRIM40Q6P9F5 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM40Q6P9F5 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM40Q6P9F5 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM40Q6P9F5 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM40Q6P9F5 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM40Q6P9F5 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.66■■□□□ 1.06
TRIM40Q6P9F5 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.66■■□□□ 1.06
TRIM40Q6P9F5 GUSBP5-201ENST00000418136 578 ntBASIC21.66■■□□□ 1.06
TRIM40Q6P9F5 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM40Q6P9F5 AC010997.5-201ENST00000609182 354 ntBASIC21.66■■□□□ 1.06
TRIM40Q6P9F5 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM40Q6P9F5 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM40Q6P9F5 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.65■■□□□ 1.06
TRIM40Q6P9F5 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM40Q6P9F5 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.65■■□□□ 1.06
TRIM40Q6P9F5 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.65■■□□□ 1.06
TRIM40Q6P9F5 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.65■■□□□ 1.06
TRIM40Q6P9F5 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM40Q6P9F5 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM40Q6P9F5 AC012676.1-201ENST00000574705 1949 ntBASIC21.65■■□□□ 1.06
TRIM40Q6P9F5 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
TRIM40Q6P9F5 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
TRIM40Q6P9F5 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRIM40Q6P9F5 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TRIM40Q6P9F5 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.64■■□□□ 1.05
TRIM40Q6P9F5 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
TRIM40Q6P9F5 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TRIM40Q6P9F5 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
TRIM40Q6P9F5 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.64■■□□□ 1.05
TRIM40Q6P9F5 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM40Q6P9F5 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms