Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC15.82■□□□□ 0.12
COL6A1P12109 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A1P12109 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.82■□□□□ 0.12
COL6A1P12109 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A1P12109 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
COL6A1P12109 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
COL6A1P12109 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A1P12109 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A1P12109 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.82■□□□□ 0.12
COL6A1P12109 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
COL6A1P12109 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
COL6A1P12109 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A1P12109 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.81■□□□□ 0.12
COL6A1P12109 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A1P12109 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A1P12109 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
COL6A1P12109 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A1P12109 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A1P12109 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A1P12109 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A1P12109 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.81■□□□□ 0.12
COL6A1P12109 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
COL6A1P12109 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
COL6A1P12109 OR7E115P-201ENST00000382617 1024 ntBASIC15.81■□□□□ 0.12
COL6A1P12109 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A1P12109 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A1P12109 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.81■□□□□ 0.12
COL6A1P12109 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC15.81■□□□□ 0.12
COL6A1P12109 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC15.81■□□□□ 0.12
COL6A1P12109 OR52M2P-201ENST00000414298 959 ntBASIC15.81■□□□□ 0.12
COL6A1P12109 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC15.81■□□□□ 0.12
COL6A1P12109 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.81■□□□□ 0.12
COL6A1P12109 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC15.81■□□□□ 0.12
COL6A1P12109 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC15.81■□□□□ 0.12
COL6A1P12109 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.81■□□□□ 0.12
COL6A1P12109 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC15.81■□□□□ 0.12
COL6A1P12109 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC15.81■□□□□ 0.12
COL6A1P12109 ODCP-201ENST00000459650 1639 ntBASIC15.81■□□□□ 0.12
COL6A1P12109 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A1P12109 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC15.81■□□□□ 0.12
COL6A1P12109 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A1P12109 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC15.81■□□□□ 0.12
COL6A1P12109 AC092612.1-201ENST00000514501 998 ntBASIC15.81■□□□□ 0.12
COL6A1P12109 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC15.81■□□□□ 0.12
COL6A1P12109 IGHEP2-201ENST00000519308 1256 ntBASIC15.81■□□□□ 0.12
COL6A1P12109 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
COL6A1P12109 DLK1-205ENST00000556051 469 ntTSL 2 BASIC15.81■□□□□ 0.12
COL6A1P12109 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A1P12109 AL009176.1-201ENST00000607876 650 ntBASIC15.81■□□□□ 0.12
COL6A1P12109 AC011462.4-201ENST00000616866 449 ntBASIC15.81■□□□□ 0.12
COL6A1P12109 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A1P12109 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A1P12109 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A1P12109 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.81■□□□□ 0.12
COL6A1P12109 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.81■□□□□ 0.12
COL6A1P12109 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A1P12109 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.81■□□□□ 0.12
COL6A1P12109 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A1P12109 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A1P12109 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A1P12109 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
COL6A1P12109 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A1P12109 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A1P12109 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A1P12109 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A1P12109 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC15.8■□□□□ 0.12
COL6A1P12109 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC15.8■□□□□ 0.12
COL6A1P12109 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A1P12109 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A1P12109 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
COL6A1P12109 LAP3P2-201ENST00000454686 1454 ntBASIC15.8■□□□□ 0.12
COL6A1P12109 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC15.8■□□□□ 0.12
COL6A1P12109 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC15.8■□□□□ 0.12
COL6A1P12109 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A1P12109 PIFO-201ENST00000369737 746 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A1P12109 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A1P12109 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A1P12109 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
COL6A1P12109 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A1P12109 AC006987.1-201ENST00000413610 527 ntBASIC15.8■□□□□ 0.12
COL6A1P12109 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A1P12109 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC15.8■□□□□ 0.12
COL6A1P12109 AL512599.1-201ENST00000430724 685 ntBASIC15.8■□□□□ 0.12
COL6A1P12109 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A1P12109 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC15.8■□□□□ 0.12
COL6A1P12109 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A1P12109 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A1P12109 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A1P12109 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC15.8■□□□□ 0.12
COL6A1P12109 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC15.8■□□□□ 0.12
COL6A1P12109 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC15.8■□□□□ 0.12
COL6A1P12109 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A1P12109 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A1P12109 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A1P12109 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.8■□□□□ 0.12
COL6A1P12109 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A1P12109 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A1P12109 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
COL6A1P12109 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A1P12109 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms