Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 AC087386.2-201ENST00000623212 4637 ntBASIC11.83□□□□□ -0.52
FOXA2Q9Y261 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
FOXA2Q9Y261 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 USP3-204ENST00000540797 5474 ntTSL 2 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 AC015818.8-201ENST00000587907 1519 ntBASIC11.82□□□□□ -0.52
FOXA2Q9Y261 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 RNA5SP486-201ENST00000515961 83 ntBASIC11.82□□□□□ -0.52
FOXA2Q9Y261 RPL8-205ENST00000527914 551 ntTSL 3 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 KRT90P-201ENST00000549264 1064 ntBASIC11.82□□□□□ -0.52
FOXA2Q9Y261 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 AC138951.2-201ENST00000623455 1161 ntBASIC11.82□□□□□ -0.52
FOXA2Q9Y261 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 AL590440.2-201ENST00000641973 1595 ntBASIC11.82□□□□□ -0.52
FOXA2Q9Y261 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 CLUHP2-201ENST00000426660 1303 ntBASIC11.82□□□□□ -0.52
FOXA2Q9Y261 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
FOXA2Q9Y261 ADAMTS7P1-201ENST00000613213 4793 ntBASIC11.82□□□□□ -0.52
FOXA2Q9Y261 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC11.81□□□□□ -0.52
FOXA2Q9Y261 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC11.81□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms