Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM39Q9HCM9 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
TRIM39Q9HCM9 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM39Q9HCM9 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM39Q9HCM9 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
TRIM39Q9HCM9 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM39Q9HCM9 AL008718.2-201ENST00000609206 1313 ntBASIC14.52□□□□□ -0.08
TRIM39Q9HCM9 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
TRIM39Q9HCM9 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 AL157407.1-201ENST00000435784 904 ntBASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 KLF2P1-201ENST00000447438 1042 ntBASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 MIR4525-201ENST00000580000 75 ntBASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 AC243960.2-201ENST00000600996 747 ntBASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 AC022748.3-201ENST00000621828 275 ntBASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 AGGF1P1-201ENST00000509500 2073 ntBASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
TRIM39Q9HCM9 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 AL390755.1-201ENST00000623716 2027 ntBASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 KRT8P28-201ENST00000433288 1390 ntBASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 AC020907.1-201ENST00000616460 1350 ntBASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 SERPINA13P-202ENST00000478994 924 ntBASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 OARD1-212ENST00000482515 832 ntTSL 2 BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 RN7SL163P-201ENST00000583100 276 ntBASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 NKG7-204ENST00000595217 816 ntTSL 2 BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 Z98259.2-201ENST00000641583 609 ntBASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.51□□□□□ -0.09
TRIM39Q9HCM9 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms