Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC14.14□□□□□ -0.15
CLDN9O95484 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC14.14□□□□□ -0.15
CLDN9O95484 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC14.14□□□□□ -0.15
CLDN9O95484 MIR3197-201ENST00000582241 73 ntBASIC14.14□□□□□ -0.15
CLDN9O95484 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CLDN9O95484 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC14.14□□□□□ -0.15
CLDN9O95484 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.14□□□□□ -0.15
CLDN9O95484 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.14□□□□□ -0.15
CLDN9O95484 AL358472.3-201ENST00000608147 415 ntBASIC14.14□□□□□ -0.15
CLDN9O95484 ZACNP1-201ENST00000612259 710 ntBASIC14.14□□□□□ -0.15
CLDN9O95484 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC14.14□□□□□ -0.15
CLDN9O95484 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.14□□□□□ -0.15
CLDN9O95484 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC14.14□□□□□ -0.15
CLDN9O95484 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC14.14□□□□□ -0.15
CLDN9O95484 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.14□□□□□ -0.15
CLDN9O95484 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
CLDN9O95484 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC14.14□□□□□ -0.15
CLDN9O95484 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
CLDN9O95484 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
CLDN9O95484 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC14.14□□□□□ -0.15
CLDN9O95484 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
CLDN9O95484 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CLDN9O95484 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLDN9O95484 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
CLDN9O95484 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC14.14□□□□□ -0.15
CLDN9O95484 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC14.13□□□□□ -0.15
CLDN9O95484 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC14.13□□□□□ -0.15
CLDN9O95484 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CLDN9O95484 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CLDN9O95484 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC14.13□□□□□ -0.15
CLDN9O95484 CICP4-201ENST00000447359 2812 ntBASIC14.13□□□□□ -0.15
CLDN9O95484 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
CLDN9O95484 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC14.13□□□□□ -0.15
CLDN9O95484 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
CLDN9O95484 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 MIR1202-201ENST00000408529 83 ntBASIC14.13□□□□□ -0.15
CLDN9O95484 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 COX5BP8-201ENST00000416911 349 ntBASIC14.13□□□□□ -0.15
CLDN9O95484 RGS5-214ENST00000429865 754 ntTSL 3 BASIC14.13□□□□□ -0.15
CLDN9O95484 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
CLDN9O95484 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC14.13□□□□□ -0.15
CLDN9O95484 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 LHX6-205ENST00000464484 666 ntTSL 2 BASIC14.13□□□□□ -0.15
CLDN9O95484 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
CLDN9O95484 AHRR-211ENST00000515206 462 ntTSL 5 BASIC14.13□□□□□ -0.15
CLDN9O95484 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CLDN9O95484 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC14.13□□□□□ -0.15
CLDN9O95484 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.13□□□□□ -0.15
CLDN9O95484 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC14.13□□□□□ -0.15
CLDN9O95484 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC14.13□□□□□ -0.15
CLDN9O95484 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC14.13□□□□□ -0.15
CLDN9O95484 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC14.13□□□□□ -0.15
CLDN9O95484 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC14.13□□□□□ -0.15
CLDN9O95484 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC14.13□□□□□ -0.15
CLDN9O95484 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 AC090643.2-201ENST00000623442 2029 ntBASIC14.13□□□□□ -0.15
CLDN9O95484 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
CLDN9O95484 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC14.13□□□□□ -0.15
CLDN9O95484 TUBB8P4-201ENST00000511806 1324 ntBASIC14.13□□□□□ -0.15
CLDN9O95484 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLDN9O95484 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.13□□□□□ -0.15
CLDN9O95484 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLDN9O95484 KRT8P4-201ENST00000509735 1454 ntBASIC14.12□□□□□ -0.15
CLDN9O95484 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC14.12□□□□□ -0.15
CLDN9O95484 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLDN9O95484 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC14.12□□□□□ -0.15
CLDN9O95484 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.12□□□□□ -0.15
CLDN9O95484 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms