Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC31.13■■■□□ 2.578e-7■□□□□ 8.9
YBX3P16989 PAXX-206ENST00000492564 701 ntTSL 326.98■■□□□ 1.918e-7■□□□□ 8.9
YBX3P16989 PAXX-207ENST00000493968 958 ntTSL 1 (best)26.8■■□□□ 1.888e-7■□□□□ 8.9
YBX3P16989 SOD2-212ENST00000540491 454 ntTSL 326.37■■□□□ 1.818e-7■□□□□ 8.9
YBX3P16989 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC25.49■■□□□ 1.678e-7■□□□□ 8.9
YBX3P16989 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC25.44■■□□□ 1.668e-7■□□□□ 8.9
YBX3P16989 PAXX-205ENST00000483807 705 ntTSL 523.64■■□□□ 1.378e-7■□□□□ 8.9
YBX3P16989 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.268e-7■□□□□ 8.9
YBX3P16989 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC22.5■■□□□ 1.198e-7■□□□□ 8.9
YBX3P16989 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.158e-7■□□□□ 8.9
YBX3P16989 PAXX-208ENST00000498095 1077 ntTSL 522.07■■□□□ 1.128e-7■□□□□ 8.9
YBX3P16989 DNAJC4-206ENST00000537109 1340 ntTSL 222.03■■□□□ 1.128e-7■□□□□ 8.9
YBX3P16989 PRMT1-214ENST00000529836 580 ntTSL 322.01■■□□□ 1.118e-7■□□□□ 8.9
YBX3P16989 PAXX-202ENST00000463765 496 ntTSL 221.76■■□□□ 1.078e-7■□□□□ 8.9
YBX3P16989 PAXX-203ENST00000467845 744 ntTSL 221.76■■□□□ 1.078e-7■□□□□ 8.9
YBX3P16989 DNAJC4-209ENST00000542376 546 ntTSL 220.73■□□□□ 0.918e-7■□□□□ 8.9
YBX3P16989 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.54■□□□□ 0.728e-7■□□□□ 8.9
YBX3P16989 DNAJC4-205ENST00000536006 693 ntTSL 319.29■□□□□ 0.688e-7■□□□□ 8.9
YBX3P16989 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.658e-7■□□□□ 8.9
YBX3P16989 SERF2-208ENST00000409617 700 ntTSL 218.77■□□□□ 0.68e-7■□□□□ 8.9
YBX3P16989 TLE3-206ENST00000542329 664 ntTSL 318.73■□□□□ 0.598e-7■□□□□ 8.9
YBX3P16989 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.578e-7■□□□□ 8.9
YBX3P16989 DNAJC4-204ENST00000535246 502 ntTSL 318.54■□□□□ 0.568e-7■□□□□ 8.9
YBX3P16989 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC18.11■□□□□ 0.498e-7■□□□□ 8.9
YBX3P16989 DNAJC4-211ENST00000543791 489 ntTSL 317.44■□□□□ 0.388e-7■□□□□ 8.9
YBX3P16989 HYPK-204ENST00000497142 428 ntTSL 217.24■□□□□ 0.358e-7■□□□□ 8.9
YBX3P16989 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.19■□□□□ 0.348e-7■□□□□ 8.9
YBX3P16989 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC17.07■□□□□ 0.328e-7■□□□□ 8.9
YBX3P16989 CEBPZ-202ENST00000446769 526 ntTSL 316.94■□□□□ 0.38e-7■□□□□ 8.9
YBX3P16989 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.288e-7■□□□□ 8.9
YBX3P16989 PRMT1-211ENST00000528623 543 ntTSL 316.73■□□□□ 0.278e-7■□□□□ 8.9
YBX3P16989 COPZ1-217ENST00000553009 567 ntTSL 316.67■□□□□ 0.266e-23■□□□□ 8.9
YBX3P16989 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.5■□□□□ 0.238e-7■□□□□ 8.9
YBX3P16989 DNAJC4-207ENST00000538961 534 ntTSL 516.22■□□□□ 0.198e-7■□□□□ 8.9
YBX3P16989 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.11■□□□□ 0.178e-7■□□□□ 8.9
YBX3P16989 SOD2-208ENST00000535459 581 ntTSL 216.02■□□□□ 0.168e-7■□□□□ 8.9
YBX3P16989 TLE3-209ENST00000557919 4294 ntTSL 515.43■□□□□ 0.068e-7■□□□□ 8.9
YBX3P16989 HYPK-203ENST00000458412 1712 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.038e-7■□□□□ 8.9
YBX3P16989 COPZ1-204ENST00000548281 554 ntTSL 414.6□□□□□ -0.076e-23■□□□□ 8.9
YBX3P16989 COPZ1-216ENST00000552848 537 ntTSL 514.38□□□□□ -0.116e-23■□□□□ 8.9
YBX3P16989 TLE3-221ENST00000560525 3647 ntTSL 514.28□□□□□ -0.128e-7■□□□□ 8.9
YBX3P16989 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.188e-7■□□□□ 8.9
YBX3P16989 SERF2-213ENST00000448830 2792 ntTSL 213.9□□□□□ -0.188e-7■□□□□ 8.9
YBX3P16989 TLE3-213ENST00000558379 2304 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.218e-7■□□□□ 8.9
YBX3P16989 COPZ1-208ENST00000550027 553 ntTSL 1 (best)13.49□□□□□ -0.256e-23■□□□□ 8.9
YBX3P16989 NDUFAF4-203ENST00000489477 624 ntTSL 313.48□□□□□ -0.258e-7■□□□□ 8.9
YBX3P16989 TLE3-220ENST00000559929 3408 ntTSL 5 BASIC13.45□□□□□ -0.268e-7■□□□□ 8.9
YBX3P16989 TLE3-208ENST00000557907 2295 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.268e-7■□□□□ 8.9
YBX3P16989 TLE3-225ENST00000561453 3719 ntTSL 513.42□□□□□ -0.268e-7■□□□□ 8.9
YBX3P16989 HYPK-201ENST00000406925 4777 ntAPPRIS P2 TSL 2 BASIC13.04□□□□□ -0.328e-7■□□□□ 8.9
YBX3P16989 COPZ1-211ENST00000551412 548 ntTSL 212.24□□□□□ -0.456e-23■□□□□ 8.9
YBX3P16989 TLE3-207ENST00000557815 7809 ntTSL 212.17□□□□□ -0.468e-7■□□□□ 8.9
YBX3P16989 TLE3-222ENST00000560589 3509 ntTSL 5 BASIC11.94□□□□□ -0.58e-7■□□□□ 8.9
YBX3P16989 PRMT1-208ENST00000527412 463 ntTSL 311.24□□□□□ -0.618e-7■□□□□ 8.9
YBX3P16989 COPZ1-210ENST00000550713 548 ntTSL 211.23□□□□□ -0.616e-23■□□□□ 8.9
YBX3P16989 LARP4-208ENST00000520064 2068 ntTSL 510.78□□□□□ -0.686e-10■□□□□ 8.9
YBX3P16989 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC10.76□□□□□ -0.696e-23■□□□□ 8.9
YBX3P16989 MPZL1-202ENST00000367853 881 ntTSL 1 (best)10.58□□□□□ -0.723e-7■□□□□ 8.9
YBX3P16989 COPZ1-203ENST00000548076 367 ntTSL 59.76□□□□□ -0.856e-23■□□□□ 8.9
YBX3P16989 MPZL1-208ENST00000474729 1335 ntTSL 1 (best)8.76□□□□□ -1.013e-7■□□□□ 8.9
YBX3P16989 SOD2-213ENST00000541573 573 ntTSL 47.63□□□□□ -1.198e-7■□□□□ 8.9
YBX3P16989 MPZL1-211ENST00000498279 534 ntTSL 47.19□□□□□ -1.263e-7■□□□□ 8.9
YBX3P16989 MPZL1-204ENST00000403379 961 ntTSL 56.61□□□□□ -1.353e-7■□□□□ 8.9
YBX3P16989 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.698e-7■□□□□ 8.9
YBX3P16989 MICU1-207ENST00000603011 774 ntTSL 514.7□□□□□ -0.061e-6■□□□□ 8.9
YBX3P16989 NIT2-207ENST00000497785 795 ntTSL 534.42■■■■□ 3.11e-6■□□□□ 8.9
YBX3P16989 NIT2-202ENST00000460317 648 ntTSL 324.25■■□□□ 1.471e-6■□□□□ 8.9
YBX3P16989 NIT2-203ENST00000465368 1469 ntTSL 1 (best)16.01■□□□□ 0.151e-6■□□□□ 8.9
YBX3P16989 NIT2-205ENST00000478856 1655 ntTSL 29.61□□□□□ -0.871e-6■□□□□ 8.9
YBX3P16989 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.311e-6■□□□□ 8.9
YBX3P16989 NIT2-204ENST00000472392 580 ntTSL 25.44□□□□□ -1.541e-6■□□□□ 8.9
YBX3P16989 NIT2-206ENST00000480073 625 ntTSL 35.43□□□□□ -1.541e-6■□□□□ 8.9
YBX3P16989 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.882e-6■□□□□ 8.9
YBX3P16989 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.422e-6■□□□□ 8.9
YBX3P16989 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.332e-6■□□□□ 8.9
YBX3P16989 CSAG4-201ENST00000361201 755 ntTSL 2 BASIC14.9□□□□□ -0.022e-6■□□□□ 8.9
YBX3P16989 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC29.41■■■□□ 2.32e-6■□□□□ 8.9
YBX3P16989 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.052e-6■□□□□ 8.9
YBX3P16989 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC20.38■□□□□ 0.852e-6■□□□□ 8.9
YBX3P16989 WSB2-203ENST00000535496 1328 ntTSL 1 (best) BASIC14.13□□□□□ -0.152e-6■□□□□ 8.9
YBX3P16989 WSB2-210ENST00000543218 935 ntTSL 213.49□□□□□ -0.252e-6■□□□□ 8.9
YBX3P16989 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC29.85■■■□□ 2.371e-6■□□□□ 8.9
YBX3P16989 ARHGAP4-221ENST00000488269 960 ntTSL 327.44■■□□□ 1.988e-7■□□□□ 8.9
YBX3P16989 BET1L-204ENST00000410108 637 ntTSL 3 BASIC26.9■■□□□ 1.93e-7■□□□□ 8.9
YBX3P16989 GAR1-204ENST00000506840 831 ntTSL 226.19■■□□□ 1.788e-7■□□□□ 8.9
YBX3P16989 DNAJC11-204ENST00000451196 1357 ntTSL 1 (best)24.87■■□□□ 1.578e-7■□□□□ 8.9
YBX3P16989 ARHGAP4-214ENST00000461052 1123 ntTSL 324.79■■□□□ 1.568e-7■□□□□ 8.9
YBX3P16989 ARHGAP4-206ENST00000418750 586 ntTSL 423.66■■□□□ 1.388e-7■□□□□ 8.9
YBX3P16989 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC23.64■■□□□ 1.378e-7■□□□□ 8.9
YBX3P16989 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC23.21■■□□□ 1.318e-7■□□□□ 8.9
YBX3P16989 ELP6-206ENST00000442215 1277 ntTSL 520.79■□□□□ 0.928e-7■□□□□ 8.9
YBX3P16989 TMEM141-202ENST00000465017 839 ntTSL 220.66■□□□□ 0.91e-6■□□□□ 8.9
YBX3P16989 TMEM141-204ENST00000483187 683 ntTSL 220.66■□□□□ 0.91e-6■□□□□ 8.9
YBX3P16989 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.788e-7■□□□□ 8.9
YBX3P16989 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC19.68■□□□□ 0.748e-7■□□□□ 8.9
YBX3P16989 ELP6-209ENST00000446787 894 ntTSL 3 BASIC19.5■□□□□ 0.718e-7■□□□□ 8.9
YBX3P16989 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.698e-7■□□□□ 8.9
YBX3P16989 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.671e-6■□□□□ 8.9
YBX3P16989 ARHGAP4-209ENST00000422918 642 ntTSL 519.04■□□□□ 0.648e-7■□□□□ 8.9
YBX3P16989 ARHGAP4-222ENST00000494302 2667 ntTSL 518.53■□□□□ 0.568e-7■□□□□ 8.9
Retrieved 100 of 29,075 protein–RNA pairs in 399.3 ms