Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 RPSAP36-202ENST00000494591 1261 ntBASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 FTLP10-202ENST00000505798 471 ntBASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 AL391280.1-201ENST00000506969 1062 ntBASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 CD74-212ENST00000524315 584 ntTSL 5 BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 AC104982.3-201ENST00000581995 514 ntBASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 AC103810.3-201ENST00000583567 96 ntBASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 AC091951.1-201ENST00000512854 2465 ntBASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC14.33□□□□□ -0.12
CLIP3Q96DZ5 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 AC099521.3-201ENST00000624251 2938 ntBASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 KRT8P4-201ENST00000509735 1454 ntBASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 AL137783.1-201ENST00000623494 1896 ntBASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 AC079178.1-201ENST00000420915 656 ntBASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 AC006033.1-201ENST00000440505 426 ntBASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 AP001258.2-201ENST00000529891 490 ntBASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 C2orf69P2-201ENST00000562032 1123 ntBASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 ZACNP1-201ENST00000612259 710 ntBASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 DCAF4-203ENST00000394234 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
CLIP3Q96DZ5 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP3Q96DZ5 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms