Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Fam210b-201ENSMUST00000028995 3617 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Gm8459-201ENSMUST00000162504 760 ntBASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Tmem242-203ENSMUST00000188282 822 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Abhd11os-203ENSMUST00000222613 363 ntBASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Ginm1-202ENSMUST00000065124 300 ntBASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Gm4978-201ENSMUST00000071565 801 ntBASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Mroh1-201ENSMUST00000092595 5111 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Rpl15-202ENSMUST00000080281 1922 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Aldoart2-201ENSMUST00000080123 1658 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Hs6st2-202ENSMUST00000114871 4351 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Mob4-205ENSMUST00000162364 2840 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3bQ3ULL6 Gm9333-201ENSMUST00000205452 1323 ntBASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Gm26684-202ENSMUST00000228229 8257 ntBASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Gm38089-201ENSMUST00000193585 1514 ntBASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 AC127597.1-201ENSMUST00000225697 5711 ntBASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Ces2e-201ENSMUST00000034355 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Pcdhga4-201ENSMUST00000194418 4727 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Clec10a-209ENSMUST00000178945 2332 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Gm28036-202ENSMUST00000132494 5505 ntAPPRIS P5 TSL 2 BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Gm14071-201ENSMUST00000117817 509 ntBASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 B9d1os-201ENSMUST00000137010 674 ntBASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Gm23699-201ENSMUST00000158835 135 ntBASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Gm19353-201ENSMUST00000184561 445 ntBASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Gm9540-201ENSMUST00000188230 478 ntBASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Gm10774-201ENSMUST00000188689 204 ntBASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Gm37835-201ENSMUST00000193305 361 ntBASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Gm43068-201ENSMUST00000201095 1273 ntBASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Gm11413-201ENSMUST00000155822 1461 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 6820426E19Rik-201ENSMUST00000204274 1970 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Lin52-201ENSMUST00000137170 2270 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Ift140-201ENSMUST00000024983 5489 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Zfp532-202ENSMUST00000169679 5003 ntTSL 5 BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Gaa-203ENSMUST00000106259 3633 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Ndc1-204ENSMUST00000139560 4584 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Upf3bQ3ULL6 Mgmt-201ENSMUST00000081510 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Upf3bQ3ULL6 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Upf3bQ3ULL6 Ttc8-201ENSMUST00000079146 2270 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Upf3bQ3ULL6 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC12.36□□□□□ -0.43
Upf3bQ3ULL6 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Upf3bQ3ULL6 Gm26615-201ENSMUST00000181522 3201 ntTSL 2 BASIC12.36□□□□□ -0.43
Upf3bQ3ULL6 Rbm4b-201ENSMUST00000036744 1783 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Upf3bQ3ULL6 Nr2f2-202ENSMUST00000089565 1664 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Upf3bQ3ULL6 2310043M15Rik-201ENSMUST00000180967 1580 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Upf3bQ3ULL6 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Upf3bQ3ULL6 Aplp2-209ENSMUST00000217641 3462 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Upf3bQ3ULL6 Gm14193-201ENSMUST00000105067 153 ntBASIC12.36□□□□□ -0.43
Upf3bQ3ULL6 Gm3150-201ENSMUST00000166418 204 ntBASIC12.36□□□□□ -0.43
Upf3bQ3ULL6 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
Upf3bQ3ULL6 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Upf3bQ3ULL6 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC12.36□□□□□ -0.43
Upf3bQ3ULL6 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC12.36□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms