Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Fan1-201ENSMUST00000163289 3460 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
Cdx1P18111 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Lipg-201ENSMUST00000066532 3787 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Trim65-202ENSMUST00000106440 4040 ntTSL 5 BASIC9.39□□□□□ -0.91
Cdx1P18111 Dkk2-201ENSMUST00000029665 3705 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Slc35a4-206ENSMUST00000186538 2842 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
Cdx1P18111 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Olfr222-202ENSMUST00000214351 2474 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
Cdx1P18111 Kansl1-201ENSMUST00000018556 5061 ntAPPRIS P2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 U2af1l4-237ENSMUST00000167042 3007 ntAPPRIS P5 TSL 2 BASIC9.39□□□□□ -0.91
Cdx1P18111 Col20a1-202ENSMUST00000149179 3867 ntAPPRIS ALT2 TSL 5 BASIC9.39□□□□□ -0.91
Cdx1P18111 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Col6a3-201ENSMUST00000056925 10106 ntTSL 5 BASIC9.39□□□□□ -0.91
Cdx1P18111 Kirrel3-201ENSMUST00000045091 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC9.39□□□□□ -0.91
Cdx1P18111 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC9.39□□□□□ -0.91
Cdx1P18111 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC9.39□□□□□ -0.91
Cdx1P18111 Dhx40-201ENSMUST00000018569 3813 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Gm37042-201ENSMUST00000193816 581 ntBASIC9.39□□□□□ -0.91
Cdx1P18111 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 CT025533.2-201ENSMUST00000228715 1248 ntBASIC9.39□□□□□ -0.91
Cdx1P18111 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
Cdx1P18111 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
Cdx1P18111 Map4-204ENSMUST00000164930 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Exoc4-203ENSMUST00000115080 2369 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Kalrn-203ENSMUST00000114947 2922 ntTSL 5 BASIC9.39□□□□□ -0.91
Cdx1P18111 AC131029.1-201ENSMUST00000226391 2929 ntBASIC9.39□□□□□ -0.91
Cdx1P18111 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC9.39□□□□□ -0.91
Cdx1P18111 Gm42971-201ENSMUST00000199228 2079 ntBASIC9.39□□□□□ -0.91
Cdx1P18111 Mkks-202ENSMUST00000110089 3178 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Gal3st2-201ENSMUST00000094663 2844 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Ttpa-201ENSMUST00000098244 3053 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Immt-205ENSMUST00000166938 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Cdx1P18111 Ccdc136-208ENSMUST00000180829 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Uhrf1-202ENSMUST00000113035 3402 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Tfam-201ENSMUST00000092430 4167 ntAPPRIS P2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Pax3-201ENSMUST00000004994 3078 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Myh2-201ENSMUST00000018641 6018 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
Cdx1P18111 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Odf2l-202ENSMUST00000098538 2564 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Scamp2-201ENSMUST00000045791 2340 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Ankrd26-201ENSMUST00000112830 6930 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
Cdx1P18111 Krt75-201ENSMUST00000042957 3266 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Pdzd7-203ENSMUST00000169459 3903 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
Cdx1P18111 Cfb-207ENSMUST00000176203 2733 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Pabpc4-201ENSMUST00000078734 2700 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC9.38□□□□□ -0.91
Cdx1P18111 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
Cdx1P18111 Idua-202ENSMUST00000112563 3373 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
Cdx1P18111 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC9.38□□□□□ -0.91
Cdx1P18111 Gm13813-201ENSMUST00000120998 787 ntBASIC9.38□□□□□ -0.91
Cdx1P18111 Gm12363-201ENSMUST00000122250 668 ntBASIC9.38□□□□□ -0.91
Cdx1P18111 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC9.38□□□□□ -0.91
Cdx1P18111 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Gm12907-201ENSMUST00000148027 507 ntTSL 2 BASIC9.38□□□□□ -0.91
Cdx1P18111 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC9.38□□□□□ -0.91
Cdx1P18111 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC9.38□□□□□ -0.91
Cdx1P18111 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Rn7s1-201ENSMUST00000174924 300 ntBASIC9.38□□□□□ -0.91
Cdx1P18111 Rn7s2-201ENSMUST00000175032 300 ntBASIC9.38□□□□□ -0.91
Cdx1P18111 Gm26461-201ENSMUST00000175064 290 ntBASIC9.38□□□□□ -0.91
Cdx1P18111 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC9.38□□□□□ -0.91
Cdx1P18111 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC9.38□□□□□ -0.91
Cdx1P18111 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Adam8-202ENSMUST00000106069 3117 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Adam8-201ENSMUST00000026546 3100 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Fdft1-201ENSMUST00000054963 2860 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 D930020B18Rik-201ENSMUST00000120642 3335 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
Cdx1P18111 Apba2-201ENSMUST00000032732 3321 ntAPPRIS P2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Lama4-201ENSMUST00000019992 6046 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Fos-201ENSMUST00000021674 2108 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Ankrd46-201ENSMUST00000057486 2509 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC9.38□□□□□ -0.91
Cdx1P18111 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Mospd2-203ENSMUST00000112248 2487 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Cdx1P18111 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms