Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 HSX1tR(CCU)J 72 nt5.16□□□□□ -1.58
UPF3P48412 MTW1YAL034W-A 870 nt5.16□□□□□ -1.58
UPF3P48412 COS9YKL219W 1224 nt5.16□□□□□ -1.58
UPF3P48412 PEX12YMR026C 1200 nt5.16□□□□□ -1.58
UPF3P48412 LEM3YNL323W 1245 nt5.16□□□□□ -1.58
UPF3P48412 YBR230W-AYBR230W-A 201 nt5.16□□□□□ -1.58
UPF3P48412 UBA2YDR390C 1911 nt5.16□□□□□ -1.58
UPF3P48412 RPT2YDL007W 1314 nt5.16□□□□□ -1.58
UPF3P48412 HUL4YJR036C 2679 nt5.16□□□□□ -1.58
UPF3P48412 VID30YGL227W 2877 nt5.15□□□□□ -1.58
UPF3P48412 GAS5YOL030W 1455 nt5.15□□□□□ -1.58
UPF3P48412 YDL034WYDL034W 345 nt5.15□□□□□ -1.59
UPF3P48412 YHR137C-AYHR137C-A 651 nt5.15□□□□□ -1.59
UPF3P48412 LNP1YHR192W 837 nt5.15□□□□□ -1.59
UPF3P48412 RPA49YNL248C 1248 nt5.15□□□□□ -1.59
UPF3P48412 CUS2YNL286W 858 nt5.15□□□□□ -1.59
UPF3P48412 YOL097W-AYOL097W-A 186 nt5.15□□□□□ -1.59
UPF3P48412 PDX3YBR035C 687 nt5.15□□□□□ -1.59
UPF3P48412 snR34snR34 203 nt5.15□□□□□ -1.59
UPF3P48412 SSY5YJL156C 2100 nt5.15□□□□□ -1.59
UPF3P48412 RTT106YNL206C 1368 nt5.15□□□□□ -1.59
UPF3P48412 YHR045WYHR045W 1683 nt5.15□□□□□ -1.59
UPF3P48412 BRL1YHR036W 1416 nt5.14□□□□□ -1.59
UPF3P48412 KIP2YPL155C 2121 nt5.14□□□□□ -1.59
UPF3P48412 YDR249CYDR249C 1122 nt5.14□□□□□ -1.59
UPF3P48412 CNL1YDR357C 369 nt5.14□□□□□ -1.59
UPF3P48412 RML2YEL050C 1182 nt5.14□□□□□ -1.59
UPF3P48412 COS4YFL062W 1140 nt5.14□□□□□ -1.59
UPF3P48412 YGL185CYGL185C 1140 nt5.14□□□□□ -1.59
UPF3P48412 DBP8YHR169W 1296 nt5.14□□□□□ -1.59
UPF3P48412 YLL059CYLL059C 507 nt5.14□□□□□ -1.59
UPF3P48412 YLR194CYLR194C 765 nt5.14□□□□□ -1.59
UPF3P48412 COS3YML132W 1140 nt5.14□□□□□ -1.59
UPF3P48412 COS2YBR302C 1140 nt5.14□□□□□ -1.59
UPF3P48412 FZO1YBR179C 2568 nt5.14□□□□□ -1.59
UPF3P48412 PSE1YMR308C 3270 nt5.14□□□□□ -1.59
UPF3P48412 CNA1YLR433C 1662 nt5.14□□□□□ -1.59
UPF3P48412 ULA1YPL003W 1389 nt5.14□□□□□ -1.59
UPF3P48412 NRD1YNL251C 1728 nt5.14□□□□□ -1.59
UPF3P48412 MED2YDL005C 1296 nt5.13□□□□□ -1.59
UPF3P48412 GRX4YER174C 735 nt5.13□□□□□ -1.59
UPF3P48412 CBF1YJR060W 1056 nt5.13□□□□□ -1.59
UPF3P48412 MSA2YKR077W 1092 nt5.13□□□□□ -1.59
UPF3P48412 YOR024WYOR024W 324 nt5.13□□□□□ -1.59
UPF3P48412 ADY3YDL239C 2373 nt5.13□□□□□ -1.59
UPF3P48412 TCM62YBR044C 1719 nt5.12□□□□□ -1.59
UPF3P48412 HPM1YIL110W 1134 nt5.12□□□□□ -1.59
UPF3P48412 PRS1YKL181W 1284 nt5.12□□□□□ -1.59
UPF3P48412 SCO1YBR037C 888 nt5.12□□□□□ -1.59
UPF3P48412 BSD2YBR290W 966 nt5.12□□□□□ -1.59
UPF3P48412 ALD3YMR169C 1521 nt5.12□□□□□ -1.59
UPF3P48412 ALD2YMR170C 1521 nt5.12□□□□□ -1.59
UPF3P48412 HIS4YCL030C 2400 nt5.12□□□□□ -1.59
UPF3P48412 GGA1YDR358W 1674 nt5.12□□□□□ -1.59
UPF3P48412 ADY2YCR010C 852 nt5.11□□□□□ -1.59
UPF3P48412 RHB1YCR027C 630 nt5.11□□□□□ -1.59
UPF3P48412 GIR2YDR152W 798 nt5.11□□□□□ -1.59
UPF3P48412 YER133W-AYER133W-A 342 nt5.11□□□□□ -1.59
UPF3P48412 YIL152WYIL152W 708 nt5.11□□□□□ -1.59
UPF3P48412 YLR374CYLR374C 390 nt5.11□□□□□ -1.59
UPF3P48412 RAD17YOR368W 1206 nt5.11□□□□□ -1.59
UPF3P48412 SUI3YPL237W 858 nt5.11□□□□□ -1.59
UPF3P48412 TOS4YLR183C 1470 nt5.11□□□□□ -1.59
UPF3P48412 DAK1YML070W 1755 nt5.11□□□□□ -1.59
UPF3P48412 SEC39YLR440C 2130 nt5.11□□□□□ -1.59
UPF3P48412 TRE1YPL176C 2352 nt5.11□□□□□ -1.59
UPF3P48412 GCV1YDR019C 1203 nt5.1□□□□□ -1.59
UPF3P48412 ERG26YGL001C 1050 nt5.1□□□□□ -1.59
UPF3P48412 COQ6YGR255C 1440 nt5.1□□□□□ -1.59
UPF3P48412 SLT2YHR030C 1455 nt5.1□□□□□ -1.59
UPF3P48412 SYN8YAL014C 768 nt5.1□□□□□ -1.59
UPF3P48412 YJR085CYJR085C 318 nt5.1□□□□□ -1.59
UPF3P48412 PGU1YJR153W 1086 nt5.1□□□□□ -1.59
UPF3P48412 YMR082CYMR082C 357 nt5.1□□□□□ -1.59
UPF3P48412 LTO1YNL260C 597 nt5.1□□□□□ -1.59
UPF3P48412 ROX3YBL093C 663 nt5.1□□□□□ -1.59
UPF3P48412 YBR219CYBR219C 384 nt5.1□□□□□ -1.59
UPF3P48412 SYG1YIL047C 2709 nt5.1□□□□□ -1.59
UPF3P48412 PMT4YJR143C 2289 nt5.09□□□□□ -1.59
UPF3P48412 STE20YHL007C 2820 nt5.09□□□□□ -1.59
UPF3P48412 MLF3YNL074C 1359 nt5.09□□□□□ -1.59
UPF3P48412 LAP3YNL239W 1365 nt5.09□□□□□ -1.59
UPF3P48412 YDR098C-AYDR098C-A 1323 nt5.09□□□□□ -1.59
UPF3P48412 YDR210C-CYDR210C-C 1323 nt5.09□□□□□ -1.59
UPF3P48412 YDR261C-CYDR261C-C 1323 nt5.09□□□□□ -1.59
UPF3P48412 YDR316W-AYDR316W-A 1323 nt5.09□□□□□ -1.59
UPF3P48412 YDR365W-AYDR365W-A 1323 nt5.09□□□□□ -1.59
UPF3P48412 YER137C-AYER137C-A 1323 nt5.09□□□□□ -1.59
UPF3P48412 YER159C-AYER159C-A 1323 nt5.09□□□□□ -1.59
UPF3P48412 YGR027W-AYGR027W-A 1323 nt5.09□□□□□ -1.59
UPF3P48412 YGR038C-AYGR038C-A 1323 nt5.09□□□□□ -1.59
UPF3P48412 YGR161C-CYGR161C-C 1323 nt5.09□□□□□ -1.59
UPF3P48412 YJR026WYJR026W 1323 nt5.09□□□□□ -1.59
UPF3P48412 YJR028WYJR028W 1323 nt5.09□□□□□ -1.59
UPF3P48412 YAR010CYAR010C 1323 nt5.09□□□□□ -1.59
UPF3P48412 YLR157C-AYLR157C-A 1323 nt5.09□□□□□ -1.59
UPF3P48412 YLR227W-AYLR227W-A 1323 nt5.09□□□□□ -1.59
UPF3P48412 YLR256W-AYLR256W-A 1323 nt5.09□□□□□ -1.59
UPF3P48412 YML040WYML040W 1323 nt5.09□□□□□ -1.59
UPF3P48412 YML045W-AYML045W-A 1323 nt5.09□□□□□ -1.59
Retrieved 100 of 7,029 protein–RNA pairs in 67.5 ms