Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 AF274858.1-201ENST00000406288 372 ntBASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 AC136604.1-202ENST00000425471 771 ntBASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 NRADDP-201ENST00000437305 691 ntBASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 AL512310.5-201ENST00000551999 515 ntBASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 AC010531.8-201ENST00000623341 685 ntBASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 AL080243.1-201ENST00000423293 1060 ntBASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 AC053503.3-201ENST00000448375 114 ntBASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 DUT-207ENST00000559416 635 ntTSL 2 BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 AL139158.3-201ENST00000641212 1562 ntBASIC18.35■□□□□ 0.53
SHANK3Q9BYB0 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 MTHFR-210ENST00000641407 2387 ntBASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 HLA-DMA-202ENST00000395303 1007 ntBASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 RN7SL351P-201ENST00000469306 248 ntBASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC18.34■□□□□ 0.53
SHANK3Q9BYB0 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHANK3Q9BYB0 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SHANK3Q9BYB0 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SHANK3Q9BYB0 TBC1D27-202ENST00000424239 1573 ntBASIC18.33■□□□□ 0.53
SHANK3Q9BYB0 AC105917.1-201ENST00000506637 2539 ntBASIC18.33■□□□□ 0.53
SHANK3Q9BYB0 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SHANK3Q9BYB0 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC18.33■□□□□ 0.53
SHANK3Q9BYB0 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SHANK3Q9BYB0 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHANK3Q9BYB0 OR2W2P-201ENST00000406313 909 ntBASIC18.33■□□□□ 0.52
SHANK3Q9BYB0 AC092570.1-201ENST00000414446 469 ntBASIC18.33■□□□□ 0.52
SHANK3Q9BYB0 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SHANK3Q9BYB0 RN7SL846P-201ENST00000467429 292 ntBASIC18.33■□□□□ 0.52
SHANK3Q9BYB0 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHANK3Q9BYB0 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC18.33■□□□□ 0.52
SHANK3Q9BYB0 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHANK3Q9BYB0 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHANK3Q9BYB0 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHANK3Q9BYB0 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC18.33■□□□□ 0.52
SHANK3Q9BYB0 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHANK3Q9BYB0 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SHANK3Q9BYB0 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC18.33■□□□□ 0.52
SHANK3Q9BYB0 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC18.33■□□□□ 0.52
SHANK3Q9BYB0 AC023157.3-201ENST00000619086 2088 ntBASIC18.33■□□□□ 0.52
SHANK3Q9BYB0 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 RNA5SP491-201ENST00000362936 118 ntBASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 U3.5-201ENST00000363448 216 ntBASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 JPT2-203ENST00000382711 894 ntTSL 4 BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC18.32■□□□□ 0.52
SHANK3Q9BYB0 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms