Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.74■□□□□ 0.11
LIG3P49916 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
LIG3P49916 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LIG3P49916 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIG3P49916 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIG3P49916 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIG3P49916 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIG3P49916 PKIG-203ENST00000372887 769 ntTSL 3 BASIC15.74■□□□□ 0.11
LIG3P49916 AC098850.1-201ENST00000419919 790 ntBASIC15.74■□□□□ 0.11
LIG3P49916 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.74■□□□□ 0.11
LIG3P49916 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC15.74■□□□□ 0.11
LIG3P49916 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC15.74■□□□□ 0.11
LIG3P49916 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC15.74■□□□□ 0.11
LIG3P49916 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC15.74■□□□□ 0.11
LIG3P49916 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC15.74■□□□□ 0.11
LIG3P49916 WASH4P-201ENST00000564273 1246 ntBASIC15.74■□□□□ 0.11
LIG3P49916 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LIG3P49916 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC15.74■□□□□ 0.11
LIG3P49916 AL391069.4-201ENST00000609583 481 ntBASIC15.74■□□□□ 0.11
LIG3P49916 MIR8072-201ENST00000614241 80 ntBASIC15.74■□□□□ 0.11
LIG3P49916 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.74■□□□□ 0.11
LIG3P49916 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.74■□□□□ 0.11
LIG3P49916 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC15.74■□□□□ 0.11
LIG3P49916 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.74■□□□□ 0.11
LIG3P49916 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LIG3P49916 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIG3P49916 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.74■□□□□ 0.11
LIG3P49916 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LIG3P49916 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIG3P49916 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC15.74■□□□□ 0.11
LIG3P49916 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LIG3P49916 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIG3P49916 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIG3P49916 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LIG3P49916 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC15.74■□□□□ 0.11
LIG3P49916 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
LIG3P49916 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC15.74■□□□□ 0.11
LIG3P49916 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
LIG3P49916 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
LIG3P49916 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LIG3P49916 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
LIG3P49916 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LIG3P49916 AC138969.3-201ENST00000546612 1459 ntBASIC15.73■□□□□ 0.11
LIG3P49916 AC138932.2-201ENST00000548268 1459 ntBASIC15.73■□□□□ 0.11
LIG3P49916 AC126755.4-201ENST00000549796 1459 ntBASIC15.73■□□□□ 0.11
LIG3P49916 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC15.73■□□□□ 0.11
LIG3P49916 C2-206ENST00000442278 2434 ntTSL 2 BASIC15.73■□□□□ 0.11
LIG3P49916 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LIG3P49916 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LIG3P49916 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.73■□□□□ 0.11
LIG3P49916 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LIG3P49916 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LIG3P49916 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LIG3P49916 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.73■□□□□ 0.11
LIG3P49916 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
LIG3P49916 AC005034.1-201ENST00000426657 489 ntBASIC15.73■□□□□ 0.11
LIG3P49916 RN7SL399P-201ENST00000471648 279 ntBASIC15.73■□□□□ 0.11
LIG3P49916 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
LIG3P49916 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
LIG3P49916 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.73■□□□□ 0.11
LIG3P49916 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC15.73■□□□□ 0.11
LIG3P49916 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.73■□□□□ 0.11
LIG3P49916 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC15.73■□□□□ 0.11
LIG3P49916 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.73■□□□□ 0.11
LIG3P49916 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.73■□□□□ 0.11
LIG3P49916 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
LIG3P49916 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC15.73■□□□□ 0.11
LIG3P49916 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
LIG3P49916 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.73■□□□□ 0.11
LIG3P49916 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
LIG3P49916 AC152010.1-201ENST00000415779 2006 ntBASIC15.73■□□□□ 0.11
LIG3P49916 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
LIG3P49916 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
LIG3P49916 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
LIG3P49916 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
LIG3P49916 CLK3P2-201ENST00000427566 1453 ntBASIC15.72■□□□□ 0.11
LIG3P49916 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
LIG3P49916 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
LIG3P49916 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LIG3P49916 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
LIG3P49916 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LIG3P49916 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
LIG3P49916 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LIG3P49916 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LIG3P49916 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
LIG3P49916 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LIG3P49916 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC15.72■□□□□ 0.11
LIG3P49916 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
LIG3P49916 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
LIG3P49916 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.72■□□□□ 0.11
LIG3P49916 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.72■□□□□ 0.11
LIG3P49916 ELK1P1-201ENST00000485699 580 ntBASIC15.72■□□□□ 0.11
LIG3P49916 AC104596.2-201ENST00000512793 793 ntBASIC15.72■□□□□ 0.11
LIG3P49916 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.72■□□□□ 0.11
LIG3P49916 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC15.72■□□□□ 0.11
LIG3P49916 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.72■□□□□ 0.11
LIG3P49916 AC036164.1-201ENST00000570544 333 ntBASIC15.72■□□□□ 0.11
LIG3P49916 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
LIG3P49916 AL035252.4-201ENST00000624174 288 ntBASIC15.72■□□□□ 0.11
LIG3P49916 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms