Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC005962.1-201ENST00000584100 773 ntBASIC16.62■□□□□ 0.25
CIITAP33076 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC16.62■□□□□ 0.25
CIITAP33076 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
CIITAP33076 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CIITAP33076 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
CIITAP33076 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC16.62■□□□□ 0.25
CIITAP33076 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
CIITAP33076 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CIITAP33076 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CIITAP33076 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CIITAP33076 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC16.62■□□□□ 0.25
CIITAP33076 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC16.62■□□□□ 0.25
CIITAP33076 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CIITAP33076 FAM90A7P-201ENST00000382628 1395 ntBASIC16.62■□□□□ 0.25
CIITAP33076 FAM90A23P-201ENST00000400136 1395 ntBASIC16.62■□□□□ 0.25
CIITAP33076 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
CIITAP33076 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
CIITAP33076 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC16.62■□□□□ 0.25
CIITAP33076 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CIITAP33076 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CIITAP33076 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC16.61■□□□□ 0.25
CIITAP33076 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
CIITAP33076 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 MBLAC2-202ENST00000514906 1936 ntBASIC16.61■□□□□ 0.25
CIITAP33076 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
CIITAP33076 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC16.61■□□□□ 0.25
CIITAP33076 AC140479.7-201ENST00000636301 2332 ntBASIC16.61■□□□□ 0.25
CIITAP33076 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC16.61■□□□□ 0.25
CIITAP33076 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC16.61■□□□□ 0.25
CIITAP33076 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
CIITAP33076 CSH2-202ENST00000345366 598 ntTSL 5 BASIC16.61■□□□□ 0.25
CIITAP33076 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 NPPA-201ENST00000376476 728 ntTSL 3 BASIC16.61■□□□□ 0.25
CIITAP33076 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 AC104073.2-201ENST00000453737 312 ntBASIC16.61■□□□□ 0.25
CIITAP33076 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC16.61■□□□□ 0.25
CIITAP33076 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC16.61■□□□□ 0.25
CIITAP33076 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC16.61■□□□□ 0.25
CIITAP33076 CSH2-206ENST00000560142 749 ntTSL 5 BASIC16.61■□□□□ 0.25
CIITAP33076 AC243960.2-201ENST00000600996 747 ntBASIC16.61■□□□□ 0.25
CIITAP33076 AL451050.2-201ENST00000606967 682 ntBASIC16.61■□□□□ 0.25
CIITAP33076 MIR6074-201ENST00000612054 107 ntBASIC16.61■□□□□ 0.25
CIITAP33076 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
CIITAP33076 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC16.61■□□□□ 0.25
CIITAP33076 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CIITAP33076 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CIITAP33076 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.61■□□□□ 0.25
CIITAP33076 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC16.61■□□□□ 0.25
CIITAP33076 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
CIITAP33076 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
CIITAP33076 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CIITAP33076 NORAD-201ENST00000565493 5339 ntBASIC16.6■□□□□ 0.25
CIITAP33076 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
CIITAP33076 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CIITAP33076 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC16.6■□□□□ 0.25
CIITAP33076 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CIITAP33076 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CIITAP33076 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
CIITAP33076 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 AC144522.1-201ENST00000625111 1658 ntBASIC16.6■□□□□ 0.25
CIITAP33076 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
CIITAP33076 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CIITAP33076 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CIITAP33076 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CIITAP33076 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CIITAP33076 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC16.6■□□□□ 0.25
CIITAP33076 GAS5-209ENST00000430245 723 ntTSL 3 BASIC16.6■□□□□ 0.25
CIITAP33076 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms