Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CX3CR1P49238 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CX3CR1P49238 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CX3CR1P49238 RPS15-201ENST00000233609 534 ntTSL 2 BASIC13.15□□□□□ -0.3
CX3CR1P49238 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CX3CR1P49238 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CX3CR1P49238 MIR770-201ENST00000390219 98 ntBASIC13.15□□□□□ -0.3
CX3CR1P49238 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
CX3CR1P49238 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC13.15□□□□□ -0.3
CX3CR1P49238 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CX3CR1P49238 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC13.15□□□□□ -0.3
CX3CR1P49238 AC087499.6-201ENST00000411576 835 ntBASIC13.15□□□□□ -0.3
CX3CR1P49238 AC114812.1-204ENST00000449669 728 ntBASIC13.15□□□□□ -0.3
CX3CR1P49238 AC022447.6-201ENST00000515522 438 ntBASIC13.15□□□□□ -0.3
CX3CR1P49238 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC13.15□□□□□ -0.3
CX3CR1P49238 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC13.15□□□□□ -0.3
CX3CR1P49238 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CX3CR1P49238 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC13.15□□□□□ -0.3
CX3CR1P49238 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC13.15□□□□□ -0.3
CX3CR1P49238 RPS15-205ENST00000586686 562 ntTSL 5 BASIC13.15□□□□□ -0.3
CX3CR1P49238 RPS15-208ENST00000591804 711 ntTSL 5 BASIC13.15□□□□□ -0.3
CX3CR1P49238 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CX3CR1P49238 AC133539.2-201ENST00000604757 467 ntBASIC13.15□□□□□ -0.3
CX3CR1P49238 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC13.15□□□□□ -0.3
CX3CR1P49238 HFE2-206ENST00000634927 506 ntTSL 4 BASIC13.15□□□□□ -0.3
CX3CR1P49238 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CX3CR1P49238 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC13.15□□□□□ -0.3
CX3CR1P49238 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
CX3CR1P49238 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CX3CR1P49238 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CX3CR1P49238 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
CX3CR1P49238 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CX3CR1P49238 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CX3CR1P49238 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CX3CR1P49238 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC13.15□□□□□ -0.3
CX3CR1P49238 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC13.15□□□□□ -0.3
CX3CR1P49238 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC13.15□□□□□ -0.3
CX3CR1P49238 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CX3CR1P49238 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CX3CR1P49238 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC13.15□□□□□ -0.3
CX3CR1P49238 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC13.15□□□□□ -0.3
CX3CR1P49238 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CX3CR1P49238 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CX3CR1P49238 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CX3CR1P49238 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CX3CR1P49238 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
CX3CR1P49238 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
CX3CR1P49238 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
CX3CR1P49238 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC13.14□□□□□ -0.31
CX3CR1P49238 LRRC59-203ENST00000576448 1531 ntBASIC13.14□□□□□ -0.31
CX3CR1P49238 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.14□□□□□ -0.31
CX3CR1P49238 AC136759.1-202ENST00000530858 2194 ntBASIC13.14□□□□□ -0.31
CX3CR1P49238 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.14□□□□□ -0.31
CX3CR1P49238 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC13.14□□□□□ -0.31
CX3CR1P49238 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC13.14□□□□□ -0.31
CX3CR1P49238 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC13.14□□□□□ -0.31
CX3CR1P49238 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
CX3CR1P49238 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 KLF2P2-201ENST00000416807 1039 ntBASIC13.14□□□□□ -0.31
CX3CR1P49238 AC098850.1-201ENST00000419919 790 ntBASIC13.14□□□□□ -0.31
CX3CR1P49238 MYCLP2-201ENST00000449268 967 ntBASIC13.14□□□□□ -0.31
CX3CR1P49238 GALT-202ENST00000450095 1280 ntTSL 2 BASIC13.14□□□□□ -0.31
CX3CR1P49238 TPT1P11-201ENST00000458482 498 ntBASIC13.14□□□□□ -0.31
CX3CR1P49238 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC13.14□□□□□ -0.31
CX3CR1P49238 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
CX3CR1P49238 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC13.14□□□□□ -0.31
CX3CR1P49238 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC13.14□□□□□ -0.31
CX3CR1P49238 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 DUX4L47-201ENST00000566374 394 ntBASIC13.14□□□□□ -0.31
CX3CR1P49238 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC13.14□□□□□ -0.31
CX3CR1P49238 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC13.14□□□□□ -0.31
CX3CR1P49238 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
CX3CR1P49238 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC13.14□□□□□ -0.31
CX3CR1P49238 AJ011932.1-201ENST00000621707 465 ntBASIC13.14□□□□□ -0.31
CX3CR1P49238 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
CX3CR1P49238 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CX3CR1P49238 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CX3CR1P49238 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC13.14□□□□□ -0.31
CX3CR1P49238 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
CX3CR1P49238 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC13.14□□□□□ -0.31
CX3CR1P49238 MX1-218ENST00000619682 1980 ntTSL 5 BASIC13.14□□□□□ -0.31
CX3CR1P49238 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms