Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 AC148477.4-201ENST00000613430 1793 ntBASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 AL138709.1-201ENST00000614840 1693 ntBASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CLIP3Q96DZ5 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 AHCYP2-201ENST00000430630 1300 ntBASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 AL139094.1-201ENST00000405549 1188 ntBASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 AL590640.2-201ENST00000457038 527 ntBASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 MIR4538-201ENST00000581377 78 ntBASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 LCK-206ENST00000373564 2137 ntTSL 5 BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CLIP3Q96DZ5 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 AC006001.1-201ENST00000325130 474 ntBASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 TPO-206ENST00000382269 1155 ntTSL 5 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 MIR1202-201ENST00000408529 83 ntBASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 PFN1P12-201ENST00000455938 534 ntBASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 RN7SL560P-201ENST00000577943 264 ntBASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 MIR4525-201ENST00000580000 75 ntBASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC14.5□□□□□ -0.09
CLIP3Q96DZ5 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms