Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 GUSBP10-201ENST00000417412 665 ntBASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 KRT8P1-201ENST00000557533 1207 ntBASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 SRP14-204ENST00000558720 780 ntTSL 2 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 ST5-261ENST00000626808 1071 ntTSL 5 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 BCL2-203ENST00000589955 5011 ntBASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCDC88AQ3V6T2 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 CTBP2P8-201ENST00000422584 1330 ntBASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 KRT17P5-201ENST00000332088 839 ntBASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 AC025183.3-201ENST00000623526 1482 ntBASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 CICP23-201ENST00000605013 2741 ntBASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCDC88AQ3V6T2 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 AC106827.1-201ENST00000366454 431 ntBASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 PPIA-208ENST00000489459 907 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 PPIA-210ENST00000620047 827 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 ZEB1-AS1-208ENST00000607166 2503 ntBASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 KRT18P46-201ENST00000435568 1279 ntBASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 RPL3P5-201ENST00000441645 1232 ntBASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 PEBP1P2-201ENST00000603980 558 ntBASIC17.78■□□□□ 0.44
CCDC88AQ3V6T2 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC88AQ3V6T2 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC88AQ3V6T2 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
CCDC88AQ3V6T2 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC88AQ3V6T2 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC88AQ3V6T2 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC17.77■□□□□ 0.44
CCDC88AQ3V6T2 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms