Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Gm11757-202ENSMUST00000107321 1324 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sox1P53783 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Sox1P53783 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sox1P53783 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sox1P53783 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sox1P53783 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Sox1P53783 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Sox1P53783 Gm43045-201ENSMUST00000198725 2095 ntBASIC12.06□□□□□ -0.48
Sox1P53783 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sox1P53783 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
Sox1P53783 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Lexm-202ENSMUST00000106788 1569 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Hmox1-201ENSMUST00000005548 1569 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Mei4-202ENSMUST00000189391 1817 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Sox1P53783 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Gm25569-201ENSMUST00000157175 131 ntBASIC12.05□□□□□ -0.48
Sox1P53783 Gm25394-201ENSMUST00000157338 133 ntBASIC12.05□□□□□ -0.48
Sox1P53783 Erg-208ENSMUST00000176345 1222 ntTSL 5 BASIC12.05□□□□□ -0.48
Sox1P53783 Gm8824-201ENSMUST00000182962 990 ntBASIC12.05□□□□□ -0.48
Sox1P53783 6720482G16Rik-201ENSMUST00000199552 1192 ntBASIC12.05□□□□□ -0.48
Sox1P53783 Gm44814-201ENSMUST00000207018 434 ntBASIC12.05□□□□□ -0.48
Sox1P53783 Bcl2l12-205ENSMUST00000207755 605 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
Sox1P53783 Gm46210-201ENSMUST00000218800 577 ntTSL 3 BASIC12.05□□□□□ -0.48
Sox1P53783 Gm12248-203ENSMUST00000219877 1160 ntAPPRIS P5 TSL 5 BASIC12.05□□□□□ -0.48
Sox1P53783 Gm9736-201ENSMUST00000219969 834 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Sox1P53783 AC170597.1-201ENSMUST00000221956 440 ntTSL 2 BASIC12.05□□□□□ -0.48
Sox1P53783 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Sox1P53783 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
Sox1P53783 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
Sox1P53783 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Klhdc10-206ENSMUST00000144272 1387 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Gm26818-201ENSMUST00000181367 1360 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sox1P53783 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Sox1P53783 Gabarapl2-201ENSMUST00000034428 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Sox1P53783 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Sox1P53783 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Gm15459-201ENSMUST00000117405 1941 ntBASIC12.04□□□□□ -0.48
Sox1P53783 Gm8355-201ENSMUST00000177767 1941 ntBASIC12.04□□□□□ -0.48
Sox1P53783 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Sox1P53783 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Gm38346-201ENSMUST00000192379 2639 ntBASIC12.04□□□□□ -0.48
Sox1P53783 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Skint7-202ENSMUST00000106568 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Dppa3-ps-201ENSMUST00000116499 451 ntBASIC12.04□□□□□ -0.48
Sox1P53783 Gm14616-201ENSMUST00000131690 314 ntTSL 3 BASIC12.04□□□□□ -0.48
Sox1P53783 C130080G10Rik-204ENSMUST00000155185 954 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Ccnb1-ps-201ENSMUST00000155338 1287 ntBASIC12.04□□□□□ -0.48
Sox1P53783 Gm26174-201ENSMUST00000158415 219 ntBASIC12.04□□□□□ -0.48
Sox1P53783 Gm17221-201ENSMUST00000163909 481 ntBASIC12.04□□□□□ -0.48
Sox1P53783 Gm17226-201ENSMUST00000166637 780 ntTSL 3 BASIC12.04□□□□□ -0.48
Sox1P53783 Gm17073-201ENSMUST00000168069 556 ntBASIC12.04□□□□□ -0.48
Sox1P53783 Ccnb1-207ENSMUST00000174038 1182 ntTSL 5 BASIC12.04□□□□□ -0.48
Sox1P53783 Mir6359-201ENSMUST00000183668 81 ntBASIC12.04□□□□□ -0.48
Sox1P53783 Auts2-216ENSMUST00000185450 144 ntTSL 5 BASIC12.04□□□□□ -0.48
Sox1P53783 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC12.04□□□□□ -0.48
Sox1P53783 Gm8197-202ENSMUST00000193422 934 ntBASIC12.04□□□□□ -0.48
Sox1P53783 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC12.04□□□□□ -0.48
Sox1P53783 4930509H03Rik-201ENSMUST00000196088 1215 ntBASIC12.04□□□□□ -0.48
Sox1P53783 CT010506.1-201ENSMUST00000223673 349 ntBASIC12.04□□□□□ -0.48
Sox1P53783 Mrpl33-201ENSMUST00000031024 478 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Gm9758-201ENSMUST00000035980 1167 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 4930572O03Rik-201ENSMUST00000092696 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Ccndbp1-202ENSMUST00000099488 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sox1P53783 AC154354.1-203ENSMUST00000225565 1364 ntBASIC12.04□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 62.8 ms