Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Upf3aQ3ULJ3 Gm6085-201ENSMUST00000182774 1470 ntBASIC21.79■■□□□ 1.08
Upf3aQ3ULJ3 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC21.79■■□□□ 1.08
Upf3aQ3ULJ3 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC21.79■■□□□ 1.08
Upf3aQ3ULJ3 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC21.79■■□□□ 1.08
Upf3aQ3ULJ3 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC21.79■■□□□ 1.08
Upf3aQ3ULJ3 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC21.79■■□□□ 1.08
Upf3aQ3ULJ3 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Upf3aQ3ULJ3 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Upf3aQ3ULJ3 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Upf3aQ3ULJ3 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Upf3aQ3ULJ3 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC21.78■■□□□ 1.08
Upf3aQ3ULJ3 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Upf3aQ3ULJ3 Gm7160-202ENSMUST00000188519 1027 ntBASIC21.78■■□□□ 1.08
Upf3aQ3ULJ3 Spcs1-204ENSMUST00000226782 949 ntBASIC21.78■■□□□ 1.08
Upf3aQ3ULJ3 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Upf3aQ3ULJ3 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Upf3aQ3ULJ3 Gm5874-201ENSMUST00000096101 508 ntBASIC21.78■■□□□ 1.08
Upf3aQ3ULJ3 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Upf3aQ3ULJ3 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Upf3aQ3ULJ3 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Upf3aQ3ULJ3 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Upf3aQ3ULJ3 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Upf3aQ3ULJ3 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC21.77■■□□□ 1.08
Upf3aQ3ULJ3 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Upf3aQ3ULJ3 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Upf3aQ3ULJ3 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Upf3aQ3ULJ3 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Upf3aQ3ULJ3 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
Upf3aQ3ULJ3 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Upf3aQ3ULJ3 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Upf3aQ3ULJ3 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Upf3aQ3ULJ3 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Upf3aQ3ULJ3 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC21.76■■□□□ 1.07
Upf3aQ3ULJ3 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Upf3aQ3ULJ3 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Upf3aQ3ULJ3 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Upf3aQ3ULJ3 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Upf3aQ3ULJ3 Cdc34b-202ENSMUST00000188741 1252 ntBASIC21.75■■□□□ 1.07
Upf3aQ3ULJ3 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Upf3aQ3ULJ3 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Upf3aQ3ULJ3 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC21.75■■□□□ 1.07
Upf3aQ3ULJ3 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Upf3aQ3ULJ3 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Upf3aQ3ULJ3 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC21.75■■□□□ 1.07
Upf3aQ3ULJ3 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Upf3aQ3ULJ3 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Upf3aQ3ULJ3 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Upf3aQ3ULJ3 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Upf3aQ3ULJ3 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC21.74■■□□□ 1.07
Upf3aQ3ULJ3 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Upf3aQ3ULJ3 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Upf3aQ3ULJ3 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Upf3aQ3ULJ3 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Upf3aQ3ULJ3 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Upf3aQ3ULJ3 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Upf3aQ3ULJ3 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Upf3aQ3ULJ3 H3f3aos-201ENSMUST00000097448 2905 ntBASIC21.73■■□□□ 1.07
Upf3aQ3ULJ3 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Upf3aQ3ULJ3 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC21.73■■□□□ 1.07
Upf3aQ3ULJ3 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Upf3aQ3ULJ3 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
Upf3aQ3ULJ3 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Upf3aQ3ULJ3 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Upf3aQ3ULJ3 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Upf3aQ3ULJ3 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC21.72■■□□□ 1.07
Upf3aQ3ULJ3 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Upf3aQ3ULJ3 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC21.71■■□□□ 1.07
Upf3aQ3ULJ3 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Upf3aQ3ULJ3 Gm26833-201ENSMUST00000180899 440 ntBASIC21.71■■□□□ 1.07
Upf3aQ3ULJ3 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
Upf3aQ3ULJ3 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC21.71■■□□□ 1.07
Upf3aQ3ULJ3 AC164883.3-201ENSMUST00000227396 1774 ntBASIC21.71■■□□□ 1.07
Upf3aQ3ULJ3 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Upf3aQ3ULJ3 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Upf3aQ3ULJ3 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Upf3aQ3ULJ3 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Upf3aQ3ULJ3 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC21.7■■□□□ 1.06
Upf3aQ3ULJ3 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC21.7■■□□□ 1.06
Upf3aQ3ULJ3 AC164629.5-201ENSMUST00000220387 632 ntBASIC21.7■■□□□ 1.06
Upf3aQ3ULJ3 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Upf3aQ3ULJ3 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Upf3aQ3ULJ3 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Upf3aQ3ULJ3 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC21.69■■□□□ 1.06
Upf3aQ3ULJ3 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Upf3aQ3ULJ3 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Upf3aQ3ULJ3 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Upf3aQ3ULJ3 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Upf3aQ3ULJ3 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Upf3aQ3ULJ3 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Upf3aQ3ULJ3 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC21.69■■□□□ 1.06
Upf3aQ3ULJ3 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Upf3aQ3ULJ3 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Upf3aQ3ULJ3 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC21.68■■□□□ 1.06
Upf3aQ3ULJ3 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC21.68■■□□□ 1.06
Upf3aQ3ULJ3 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Upf3aQ3ULJ3 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC21.68■■□□□ 1.06
Upf3aQ3ULJ3 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Upf3aQ3ULJ3 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Upf3aQ3ULJ3 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC21.67■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 12.6 ms