Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 FAM8A4P-201ENST00000435433 1213 ntBASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 GCOM2-201ENST00000509133 1104 ntBASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 AL512343.1-201ENST00000605837 169 ntBASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 AC063926.2-201ENST00000623766 1308 ntBASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 AP000593.2-201ENST00000542775 1433 ntBASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SMC4Q9NTJ3 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 ANKRD30BP2-201ENST00000435744 1610 ntBASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 MPI-203ENST00000535694 1523 ntTSL 2 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 AC234783.1-201ENST00000441761 496 ntBASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 AC022447.6-201ENST00000515522 438 ntBASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 RAB43P1-201ENST00000561790 589 ntBASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC19.12■□□□□ 0.65
SMC4Q9NTJ3 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 AC006001.1-201ENST00000325130 474 ntBASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 ANKRD19P-201ENST00000338192 862 ntBASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 CD8B2-202ENST00000417670 633 ntBASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 RPL7P3-201ENST00000441388 714 ntBASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 AP000812.2-201ENST00000538934 718 ntBASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC19.11■□□□□ 0.65
SMC4Q9NTJ3 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms