Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 AC245100.3-201ENST00000441281 285 ntBASIC18.03■□□□□ 0.48
VPS53Q5VIR6 AC022210.1-201ENST00000449856 793 ntBASIC18.03■□□□□ 0.48
VPS53Q5VIR6 CTBP2P5-201ENST00000454986 1264 ntBASIC18.03■□□□□ 0.48
VPS53Q5VIR6 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 RPS24-214ENST00000613865 538 ntTSL 5 BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 AC132938.4-201ENST00000623835 848 ntBASIC18.03■□□□□ 0.48
VPS53Q5VIR6 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC18.03■□□□□ 0.48
VPS53Q5VIR6 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC18.02■□□□□ 0.48
VPS53Q5VIR6 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS53Q5VIR6 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
VPS53Q5VIR6 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS53Q5VIR6 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS53Q5VIR6 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC18.02■□□□□ 0.48
VPS53Q5VIR6 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS53Q5VIR6 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS53Q5VIR6 ABR-205ENST00000544583 5595 ntTSL 2 BASIC18.02■□□□□ 0.48
VPS53Q5VIR6 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC18.02■□□□□ 0.48
VPS53Q5VIR6 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS53Q5VIR6 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS53Q5VIR6 OR8S1-201ENST00000310194 1080 ntBASIC18.02■□□□□ 0.48
VPS53Q5VIR6 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC18.02■□□□□ 0.48
VPS53Q5VIR6 C2orf27AP3-201ENST00000434123 579 ntBASIC18.02■□□□□ 0.48
VPS53Q5VIR6 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC18.02■□□□□ 0.48
VPS53Q5VIR6 GPR53P-205ENST00000457298 1084 ntBASIC18.02■□□□□ 0.48
VPS53Q5VIR6 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
VPS53Q5VIR6 RNA5SP486-201ENST00000515961 83 ntBASIC18.02■□□□□ 0.48
VPS53Q5VIR6 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VPS53Q5VIR6 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC18.02■□□□□ 0.48
VPS53Q5VIR6 AP000812.2-201ENST00000538934 718 ntBASIC18.02■□□□□ 0.48
VPS53Q5VIR6 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC18.02■□□□□ 0.48
VPS53Q5VIR6 AL354718.3-201ENST00000616414 581 ntBASIC18.02■□□□□ 0.48
VPS53Q5VIR6 CR382287.1-201ENST00000623954 586 ntBASIC18.02■□□□□ 0.48
VPS53Q5VIR6 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS53Q5VIR6 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC18.02■□□□□ 0.48
VPS53Q5VIR6 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC18.02■□□□□ 0.48
VPS53Q5VIR6 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VPS53Q5VIR6 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VPS53Q5VIR6 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VPS53Q5VIR6 API5-203ENST00000455725 2257 ntTSL 2 BASIC18.02■□□□□ 0.47
VPS53Q5VIR6 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC18.02■□□□□ 0.47
VPS53Q5VIR6 MPI-203ENST00000535694 1523 ntTSL 2 BASIC18.02■□□□□ 0.47
VPS53Q5VIR6 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
VPS53Q5VIR6 AC113367.3-201ENST00000508316 1912 ntBASIC18.02■□□□□ 0.47
VPS53Q5VIR6 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
VPS53Q5VIR6 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC18.02■□□□□ 0.47
VPS53Q5VIR6 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 OR2I1P-209ENST00000641730 5365 ntBASIC18.01■□□□□ 0.47
VPS53Q5VIR6 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 AC020910.5-201ENST00000623668 1865 ntBASIC18.01■□□□□ 0.47
VPS53Q5VIR6 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 AC026954.1-201ENST00000429771 1293 ntBASIC18.01■□□□□ 0.47
VPS53Q5VIR6 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 RPL7P3-201ENST00000441388 714 ntBASIC18.01■□□□□ 0.47
VPS53Q5VIR6 AC234783.1-201ENST00000441761 496 ntBASIC18.01■□□□□ 0.47
VPS53Q5VIR6 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 AL391280.1-201ENST00000506969 1062 ntBASIC18.01■□□□□ 0.47
VPS53Q5VIR6 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 APRT-204ENST00000563655 709 ntTSL 5 BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC18.01■□□□□ 0.47
VPS53Q5VIR6 AC138951.2-201ENST00000623455 1161 ntBASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms