Protein–RNA interactions for Protein: Q2M329

CCDC96, Coiled-coil domain-containing protein 96, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC96Q2M329 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC96Q2M329 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CCDC96Q2M329 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC96Q2M329 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC96Q2M329 AC020910.5-201ENST00000623668 1865 ntBASIC17.46■□□□□ 0.39
CCDC96Q2M329 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC96Q2M329 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC96Q2M329 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC96Q2M329 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC96Q2M329 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CCDC96Q2M329 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
CCDC96Q2M329 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC96Q2M329 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC96Q2M329 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC96Q2M329 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC96Q2M329 AL136309.1-201ENST00000403917 691 ntBASIC17.46■□□□□ 0.39
CCDC96Q2M329 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC17.46■□□□□ 0.39
CCDC96Q2M329 AC004945.1-201ENST00000416738 983 ntBASIC17.46■□□□□ 0.39
CCDC96Q2M329 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC17.46■□□□□ 0.39
CCDC96Q2M329 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC96Q2M329 AL591846.1-201ENST00000451736 433 ntBASIC17.46■□□□□ 0.39
CCDC96Q2M329 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC17.46■□□□□ 0.39
CCDC96Q2M329 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC96Q2M329 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC96Q2M329 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC96Q2M329 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC17.46■□□□□ 0.39
CCDC96Q2M329 AC104982.3-201ENST00000581995 514 ntBASIC17.46■□□□□ 0.39
CCDC96Q2M329 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC17.46■□□□□ 0.39
CCDC96Q2M329 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CCDC96Q2M329 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC17.46■□□□□ 0.39
CCDC96Q2M329 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC17.46■□□□□ 0.39
CCDC96Q2M329 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC96Q2M329 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC96Q2M329 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC96Q2M329 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC96Q2M329 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC96Q2M329 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC96Q2M329 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC17.46■□□□□ 0.39
CCDC96Q2M329 TNRC18P2-201ENST00000417666 2714 ntBASIC17.46■□□□□ 0.39
CCDC96Q2M329 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CCDC96Q2M329 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC96Q2M329 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC17.46■□□□□ 0.39
CCDC96Q2M329 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CCDC96Q2M329 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CCDC96Q2M329 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
CCDC96Q2M329 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC96Q2M329 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC96Q2M329 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC96Q2M329 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC96Q2M329 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC96Q2M329 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC96Q2M329 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC96Q2M329 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CCDC96Q2M329 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC96Q2M329 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC96Q2M329 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC96Q2M329 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC17.45■□□□□ 0.38
CCDC96Q2M329 RN7SKP175-201ENST00000408472 289 ntBASIC17.45■□□□□ 0.38
CCDC96Q2M329 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CCDC96Q2M329 NCK2-206ENST00000522586 490 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC96Q2M329 EMC4-209ENST00000559421 497 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC96Q2M329 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC17.45■□□□□ 0.38
CCDC96Q2M329 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC17.45■□□□□ 0.38
CCDC96Q2M329 AC138696.2-201ENST00000607376 223 ntBASIC17.45■□□□□ 0.38
CCDC96Q2M329 AC244157.2-201ENST00000616239 1006 ntBASIC17.45■□□□□ 0.38
CCDC96Q2M329 AP001002.3-201ENST00000623482 206 ntBASIC17.45■□□□□ 0.38
CCDC96Q2M329 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC96Q2M329 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
CCDC96Q2M329 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC96Q2M329 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CCDC96Q2M329 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC96Q2M329 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
CCDC96Q2M329 AC023090.2-201ENST00000625182 2110 ntBASIC17.45■□□□□ 0.38
CCDC96Q2M329 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC96Q2M329 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC96Q2M329 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC96Q2M329 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
CCDC96Q2M329 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC96Q2M329 AP000593.2-201ENST00000542775 1433 ntBASIC17.45■□□□□ 0.38
CCDC96Q2M329 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC96Q2M329 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CCDC96Q2M329 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC96Q2M329 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC96Q2M329 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
CCDC96Q2M329 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC17.45■□□□□ 0.38
CCDC96Q2M329 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC96Q2M329 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC96Q2M329 AC009093.2-202ENST00000620513 2079 ntBASIC17.44■□□□□ 0.38
CCDC96Q2M329 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC96Q2M329 PCDHGB8P-201ENST00000502926 1973 ntBASIC17.44■□□□□ 0.38
CCDC96Q2M329 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC96Q2M329 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC96Q2M329 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC96Q2M329 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC96Q2M329 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC96Q2M329 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC96Q2M329 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CCDC96Q2M329 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
CCDC96Q2M329 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC96Q2M329 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms