Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC14.22□□□□□ -0.13
SOX3P41225 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
SOX3P41225 SLC25A47P1-201ENST00000531577 414 ntBASIC14.22□□□□□ -0.13
SOX3P41225 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.22□□□□□ -0.13
SOX3P41225 RAB43P1-201ENST00000561790 589 ntBASIC14.22□□□□□ -0.13
SOX3P41225 AC106886.1-201ENST00000568660 600 ntBASIC14.22□□□□□ -0.13
SOX3P41225 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.22□□□□□ -0.13
SOX3P41225 BTNL10-201ENST00000595971 695 ntBASIC14.22□□□□□ -0.13
SOX3P41225 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.22□□□□□ -0.13
SOX3P41225 AC233724.13-201ENST00000598383 410 ntBASIC14.22□□□□□ -0.13
SOX3P41225 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.22□□□□□ -0.13
SOX3P41225 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.22□□□□□ -0.13
SOX3P41225 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.22□□□□□ -0.13
SOX3P41225 AGER-206ENST00000375070 1463 ntTSL 5 BASIC14.22□□□□□ -0.13
SOX3P41225 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
SOX3P41225 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.22□□□□□ -0.13
SOX3P41225 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.22□□□□□ -0.13
SOX3P41225 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX3P41225 AC018665.1-201ENST00000622927 1362 ntBASIC14.22□□□□□ -0.13
SOX3P41225 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SOX3P41225 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
SOX3P41225 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
SOX3P41225 MSTO2P-201ENST00000314835 1709 ntBASIC14.21□□□□□ -0.13
SOX3P41225 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX3P41225 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX3P41225 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX3P41225 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
SOX3P41225 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
SOX3P41225 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC14.21□□□□□ -0.13
SOX3P41225 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SOX3P41225 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX3P41225 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX3P41225 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX3P41225 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.21□□□□□ -0.13
SOX3P41225 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
SOX3P41225 ARSEP1-201ENST00000420443 635 ntBASIC14.21□□□□□ -0.13
SOX3P41225 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC14.21□□□□□ -0.13
SOX3P41225 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.21□□□□□ -0.13
SOX3P41225 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.21□□□□□ -0.13
SOX3P41225 AC093433.1-201ENST00000458048 571 ntBASIC14.21□□□□□ -0.13
SOX3P41225 ACA64.2-201ENST00000459014 129 ntBASIC14.21□□□□□ -0.13
SOX3P41225 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.21□□□□□ -0.13
SOX3P41225 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC14.21□□□□□ -0.13
SOX3P41225 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC14.21□□□□□ -0.13
SOX3P41225 IGHV3-71-201ENST00000523324 359 ntBASIC14.21□□□□□ -0.13
SOX3P41225 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.21□□□□□ -0.13
SOX3P41225 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
SOX3P41225 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.21□□□□□ -0.13
SOX3P41225 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.21□□□□□ -0.13
SOX3P41225 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.21□□□□□ -0.13
SOX3P41225 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.21□□□□□ -0.13
SOX3P41225 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
SOX3P41225 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
SOX3P41225 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC14.21□□□□□ -0.13
SOX3P41225 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX3P41225 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC14.21□□□□□ -0.13
SOX3P41225 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
SOX3P41225 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX3P41225 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX3P41225 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX3P41225 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX3P41225 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX3P41225 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX3P41225 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
SOX3P41225 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SOX3P41225 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SOX3P41225 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
SOX3P41225 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
SOX3P41225 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
SOX3P41225 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
SOX3P41225 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SOX3P41225 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
SOX3P41225 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.21□□□□□ -0.14
SOX3P41225 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SOX3P41225 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.21□□□□□ -0.14
SOX3P41225 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
SOX3P41225 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SOX3P41225 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.2□□□□□ -0.14
SOX3P41225 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.2□□□□□ -0.14
SOX3P41225 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SOX3P41225 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms