Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 REXO1L2P-201ENST00000425429 2069 ntBASIC20.02■□□□□ 0.8
NPHP3Q7Z494 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC20.02■□□□□ 0.8
NPHP3Q7Z494 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP3Q7Z494 WT1-209ENST00000530998 2421 ntTSL 2 BASIC20.02■□□□□ 0.8
NPHP3Q7Z494 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
NPHP3Q7Z494 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP3Q7Z494 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
NPHP3Q7Z494 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
NPHP3Q7Z494 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC20.02■□□□□ 0.79
NPHP3Q7Z494 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
NPHP3Q7Z494 COX20P1-201ENST00000366529 357 ntBASIC20.02■□□□□ 0.79
NPHP3Q7Z494 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
NPHP3Q7Z494 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
NPHP3Q7Z494 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC20.02■□□□□ 0.79
NPHP3Q7Z494 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
NPHP3Q7Z494 RN7SKP109-201ENST00000410592 316 ntBASIC20.02■□□□□ 0.79
NPHP3Q7Z494 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
NPHP3Q7Z494 RPL35P9-201ENST00000446059 350 ntBASIC20.02■□□□□ 0.79
NPHP3Q7Z494 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
NPHP3Q7Z494 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
NPHP3Q7Z494 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
NPHP3Q7Z494 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
NPHP3Q7Z494 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC20.02■□□□□ 0.79
NPHP3Q7Z494 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 AL139384.1-201ENST00000612143 3047 ntBASIC20.01■□□□□ 0.79
NPHP3Q7Z494 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 PCDHB19P-201ENST00000570871 2371 ntBASIC20.01■□□□□ 0.79
NPHP3Q7Z494 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 KRT17P4-201ENST00000429445 819 ntBASIC20.01■□□□□ 0.79
NPHP3Q7Z494 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 ERP29P1-201ENST00000442902 706 ntBASIC20.01■□□□□ 0.79
NPHP3Q7Z494 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 KRT8P1-201ENST00000557533 1207 ntBASIC20.01■□□□□ 0.79
NPHP3Q7Z494 AC018695.6-201ENST00000614011 534 ntBASIC20.01■□□□□ 0.79
NPHP3Q7Z494 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
NPHP3Q7Z494 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP3Q7Z494 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
NPHP3Q7Z494 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
NPHP3Q7Z494 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC20■□□□□ 0.79
NPHP3Q7Z494 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP3Q7Z494 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC20■□□□□ 0.79
NPHP3Q7Z494 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP3Q7Z494 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC20■□□□□ 0.79
NPHP3Q7Z494 CES3-203ENST00000543856 3178 ntTSL 2 BASIC20■□□□□ 0.79
NPHP3Q7Z494 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC20■□□□□ 0.79
NPHP3Q7Z494 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC20■□□□□ 0.79
NPHP3Q7Z494 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP3Q7Z494 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP3Q7Z494 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP3Q7Z494 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC20■□□□□ 0.79
NPHP3Q7Z494 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP3Q7Z494 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC20■□□□□ 0.79
NPHP3Q7Z494 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP3Q7Z494 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC20■□□□□ 0.79
NPHP3Q7Z494 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC20■□□□□ 0.79
NPHP3Q7Z494 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP3Q7Z494 FAM90A21P-201ENST00000510875 1396 ntBASIC20■□□□□ 0.79
NPHP3Q7Z494 FAM90A15P-201ENST00000514465 1395 ntBASIC20■□□□□ 0.79
NPHP3Q7Z494 FAM90A6P-201ENST00000515148 1394 ntBASIC20■□□□□ 0.79
NPHP3Q7Z494 FAM90A16P-201ENST00000526662 1395 ntBASIC20■□□□□ 0.79
NPHP3Q7Z494 FAM90A9P-201ENST00000527940 1395 ntBASIC20■□□□□ 0.79
NPHP3Q7Z494 FAM90A5P-201ENST00000528738 1395 ntBASIC20■□□□□ 0.79
NPHP3Q7Z494 FAM90A14P-201ENST00000530386 1395 ntBASIC20■□□□□ 0.79
NPHP3Q7Z494 FAM90A13P-201ENST00000534703 1395 ntBASIC20■□□□□ 0.79
NPHP3Q7Z494 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP3Q7Z494 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP3Q7Z494 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC20■□□□□ 0.79
NPHP3Q7Z494 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC20■□□□□ 0.79
NPHP3Q7Z494 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC20■□□□□ 0.79
NPHP3Q7Z494 AC002044.2-201ENST00000624910 970 ntBASIC20■□□□□ 0.79
NPHP3Q7Z494 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC20■□□□□ 0.79
NPHP3Q7Z494 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
NPHP3Q7Z494 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP3Q7Z494 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms