Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC13.91□□□□□ -0.18
Traf1P39428 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Gm1995-201ENSMUST00000220838 2602 ntBASIC13.91□□□□□ -0.18
Traf1P39428 Gm7224-201ENSMUST00000121359 2066 ntBASIC13.91□□□□□ -0.18
Traf1P39428 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
Traf1P39428 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Traf1P39428 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Traf1P39428 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Traf1P39428 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Traf1P39428 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Traf1P39428 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
Traf1P39428 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Traf1P39428 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Traf1P39428 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Traf1P39428 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Traf1P39428 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Traf1P39428 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Traf1P39428 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC13.9□□□□□ -0.18
Traf1P39428 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Traf1P39428 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC13.9□□□□□ -0.18
Traf1P39428 Gm12616-201ENSMUST00000118594 382 ntBASIC13.9□□□□□ -0.18
Traf1P39428 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Traf1P39428 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC13.9□□□□□ -0.18
Traf1P39428 Gm12624-201ENSMUST00000177615 382 ntBASIC13.9□□□□□ -0.18
Traf1P39428 Gm12621-201ENSMUST00000177760 382 ntBASIC13.9□□□□□ -0.18
Traf1P39428 Gm12615-201ENSMUST00000177970 382 ntBASIC13.9□□□□□ -0.18
Traf1P39428 Gm12622-201ENSMUST00000177975 382 ntBASIC13.9□□□□□ -0.18
Traf1P39428 Gm12627-201ENSMUST00000178412 382 ntBASIC13.9□□□□□ -0.18
Traf1P39428 Gm12625-201ENSMUST00000179122 382 ntBASIC13.9□□□□□ -0.18
Traf1P39428 Gm12614-201ENSMUST00000179586 382 ntBASIC13.9□□□□□ -0.18
Traf1P39428 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC13.9□□□□□ -0.18
Traf1P39428 Gm12613-201ENSMUST00000180323 382 ntBASIC13.9□□□□□ -0.18
Traf1P39428 Gm44100-201ENSMUST00000204329 436 ntBASIC13.9□□□□□ -0.18
Traf1P39428 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC13.9□□□□□ -0.18
Traf1P39428 AC154680.1-201ENSMUST00000224376 859 ntBASIC13.9□□□□□ -0.18
Traf1P39428 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Traf1P39428 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Traf1P39428 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Traf1P39428 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Traf1P39428 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Traf1P39428 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Traf1P39428 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Traf1P39428 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Traf1P39428 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Traf1P39428 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Traf1P39428 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Traf1P39428 AC166574.4-201ENSMUST00000227165 1937 ntBASIC13.9□□□□□ -0.18
Traf1P39428 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Traf1P39428 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Traf1P39428 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Traf1P39428 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
Traf1P39428 Gm9072-201ENSMUST00000218390 1514 ntBASIC13.9□□□□□ -0.19
Traf1P39428 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC13.9□□□□□ -0.19
Traf1P39428 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Traf1P39428 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Traf1P39428 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Traf1P39428 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
Traf1P39428 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC13.89□□□□□ -0.19
Traf1P39428 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC13.89□□□□□ -0.19
Traf1P39428 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Traf1P39428 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Traf1P39428 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Traf1P39428 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Traf1P39428 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Traf1P39428 Derl2-202ENSMUST00000108523 884 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Traf1P39428 Gm7851-201ENSMUST00000117574 323 ntBASIC13.89□□□□□ -0.19
Traf1P39428 Gm15610-201ENSMUST00000120584 195 ntBASIC13.89□□□□□ -0.19
Traf1P39428 Cd63-ps-202ENSMUST00000154992 717 ntBASIC13.89□□□□□ -0.19
Traf1P39428 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC13.89□□□□□ -0.19
Traf1P39428 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Traf1P39428 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC13.89□□□□□ -0.19
Traf1P39428 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Traf1P39428 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC13.89□□□□□ -0.19
Traf1P39428 Rbp2-201ENSMUST00000035029 672 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Traf1P39428 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
Traf1P39428 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Traf1P39428 Klhl14-201ENSMUST00000049105 4018 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Traf1P39428 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Traf1P39428 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Traf1P39428 Fbxl12-201ENSMUST00000086458 2056 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Traf1P39428 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Traf1P39428 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Traf1P39428 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Traf1P39428 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Traf1P39428 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Traf1P39428 Gm2420-201ENSMUST00000119864 2149 ntBASIC13.88□□□□□ -0.19
Traf1P39428 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Traf1P39428 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Traf1P39428 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms