Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC13.52□□□□□ -0.24
GFRA1P56159 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC13.52□□□□□ -0.24
GFRA1P56159 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
GFRA1P56159 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
GFRA1P56159 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
GFRA1P56159 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
GFRA1P56159 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
GFRA1P56159 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
GFRA1P56159 FAM86MP-201ENST00000340703 885 ntBASIC13.52□□□□□ -0.25
GFRA1P56159 RN7SKP230-201ENST00000365642 335 ntBASIC13.52□□□□□ -0.25
GFRA1P56159 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
GFRA1P56159 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
GFRA1P56159 AL136309.1-201ENST00000403917 691 ntBASIC13.52□□□□□ -0.25
GFRA1P56159 RN7SKP175-201ENST00000408472 289 ntBASIC13.52□□□□□ -0.25
GFRA1P56159 AC004945.1-201ENST00000416738 983 ntBASIC13.52□□□□□ -0.25
GFRA1P56159 GOLGA2P4-201ENST00000441462 777 ntBASIC13.52□□□□□ -0.25
GFRA1P56159 CHMP1AP1-201ENST00000445563 662 ntBASIC13.52□□□□□ -0.25
GFRA1P56159 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC13.52□□□□□ -0.25
GFRA1P56159 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
GFRA1P56159 DERL2-202ENST00000570848 657 ntTSL 5 BASIC13.52□□□□□ -0.25
GFRA1P56159 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
GFRA1P56159 CYGB-203ENST00000589145 788 ntTSL 3 BASIC13.52□□□□□ -0.25
GFRA1P56159 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC13.52□□□□□ -0.25
GFRA1P56159 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
GFRA1P56159 AL138725.1-201ENST00000407347 1314 ntBASIC13.52□□□□□ -0.25
GFRA1P56159 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.52□□□□□ -0.25
GFRA1P56159 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
GFRA1P56159 AC015818.8-201ENST00000587907 1519 ntBASIC13.52□□□□□ -0.25
GFRA1P56159 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
GFRA1P56159 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
GFRA1P56159 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
GFRA1P56159 AL023775.1-201ENST00000454907 1746 ntBASIC13.52□□□□□ -0.25
GFRA1P56159 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.52□□□□□ -0.25
GFRA1P56159 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
GFRA1P56159 INE2-201ENST00000630399 1874 ntBASIC13.52□□□□□ -0.25
GFRA1P56159 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
GFRA1P56159 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
GFRA1P56159 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
GFRA1P56159 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC13.52□□□□□ -0.25
GFRA1P56159 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC13.52□□□□□ -0.25
GFRA1P56159 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC13.52□□□□□ -0.25
GFRA1P56159 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
GFRA1P56159 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
GFRA1P56159 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC13.52□□□□□ -0.25
GFRA1P56159 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
GFRA1P56159 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC13.52□□□□□ -0.25
GFRA1P56159 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
GFRA1P56159 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
GFRA1P56159 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
GFRA1P56159 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC13.51□□□□□ -0.25
GFRA1P56159 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC13.51□□□□□ -0.25
GFRA1P56159 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
GFRA1P56159 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC13.51□□□□□ -0.25
GFRA1P56159 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC13.51□□□□□ -0.25
GFRA1P56159 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
GFRA1P56159 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
GFRA1P56159 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
GFRA1P56159 AGAP7P-201ENST00000582299 2062 ntBASIC13.51□□□□□ -0.25
GFRA1P56159 AGAP14-201ENST00000624701 2060 ntBASIC13.51□□□□□ -0.25
GFRA1P56159 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
GFRA1P56159 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
GFRA1P56159 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
GFRA1P56159 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 AC011840.2-201ENST00000563063 1520 ntBASIC13.51□□□□□ -0.25
GFRA1P56159 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC13.51□□□□□ -0.25
GFRA1P56159 KRT8P4-201ENST00000509735 1454 ntBASIC13.51□□□□□ -0.25
GFRA1P56159 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC13.51□□□□□ -0.25
GFRA1P56159 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 BRWD1P1-201ENST00000401091 371 ntBASIC13.51□□□□□ -0.25
GFRA1P56159 TLE1P1-201ENST00000422965 589 ntBASIC13.51□□□□□ -0.25
GFRA1P56159 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC13.51□□□□□ -0.25
GFRA1P56159 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
GFRA1P56159 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
GFRA1P56159 NCK2-206ENST00000522586 490 ntTSL 5 BASIC13.51□□□□□ -0.25
GFRA1P56159 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC13.51□□□□□ -0.25
GFRA1P56159 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC13.51□□□□□ -0.25
GFRA1P56159 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.51□□□□□ -0.25
GFRA1P56159 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC13.51□□□□□ -0.25
GFRA1P56159 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC13.51□□□□□ -0.25
GFRA1P56159 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
GFRA1P56159 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
GFRA1P56159 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms