Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAIPQ9BWF2 TCAF2P1-201ENST00000291129 2421 ntBASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 AC022616.1-201ENST00000518688 554 ntBASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 HNRNPA1P48-202ENST00000565308 961 ntBASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 KLK3-211ENST00000597483 810 ntTSL 2 BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 ECM1P1-201ENST00000604092 1279 ntBASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRAIPQ9BWF2 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 AP002414.2-201ENST00000591780 3365 ntBASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 AC138035.3-201ENST00000622706 2791 ntBASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 MIR326-201ENST00000362220 95 ntBASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 AC006033.1-201ENST00000440505 426 ntBASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 AC245100.3-201ENST00000441281 285 ntBASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 CNN2P10-201ENST00000443067 918 ntBASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 HOMER2P2-201ENST00000451621 847 ntBASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 AL591846.1-201ENST00000451736 433 ntBASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 AC103810.3-201ENST00000583567 96 ntBASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 EEF1DP1-201ENST00000585891 896 ntBASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 AC091271.1-201ENST00000611877 1162 ntBASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 GPR182-203ENST00000622922 591 ntBASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.6■□□□□ 0.25
TRAIPQ9BWF2 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms