Protein–RNA interactions for Protein: Q99616

CCL13, C-C motif chemokine 13, humanhuman

Predictions only

Length 98 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL13Q99616 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL13Q99616 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL13Q99616 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL13Q99616 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL13Q99616 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CCL13Q99616 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC12.73□□□□□ -0.37
CCL13Q99616 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL13Q99616 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL13Q99616 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
CCL13Q99616 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL13Q99616 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
CCL13Q99616 LINC00528-201ENST00000600723 2160 ntBASIC12.73□□□□□ -0.37
CCL13Q99616 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL13Q99616 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL13Q99616 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CCL13Q99616 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL13Q99616 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL13Q99616 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL13Q99616 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
CCL13Q99616 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL13Q99616 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
CCL13Q99616 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 PCDHGB8P-201ENST00000502926 1973 ntBASIC12.72□□□□□ -0.37
CCL13Q99616 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
CCL13Q99616 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
CCL13Q99616 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
CCL13Q99616 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC12.72□□□□□ -0.37
CCL13Q99616 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC12.72□□□□□ -0.37
CCL13Q99616 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC12.72□□□□□ -0.37
CCL13Q99616 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC12.72□□□□□ -0.37
CCL13Q99616 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC12.72□□□□□ -0.37
CCL13Q99616 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC12.72□□□□□ -0.37
CCL13Q99616 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC12.72□□□□□ -0.37
CCL13Q99616 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
CCL13Q99616 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC12.72□□□□□ -0.37
CCL13Q99616 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
CCL13Q99616 PGGT1BP2-201ENST00000398621 1028 ntBASIC12.72□□□□□ -0.37
CCL13Q99616 AC012441.1-201ENST00000446669 685 ntBASIC12.72□□□□□ -0.37
CCL13Q99616 GAPDHP21-201ENST00000450301 1010 ntBASIC12.72□□□□□ -0.37
CCL13Q99616 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
CCL13Q99616 AC022137.2-201ENST00000503482 481 ntBASIC12.72□□□□□ -0.37
CCL13Q99616 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC12.72□□□□□ -0.37
CCL13Q99616 FUZ-207ENST00000526575 482 ntTSL 4 BASIC12.72□□□□□ -0.37
CCL13Q99616 SLC25A47P1-201ENST00000531577 414 ntBASIC12.72□□□□□ -0.37
CCL13Q99616 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
CCL13Q99616 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC12.72□□□□□ -0.37
CCL13Q99616 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC12.72□□□□□ -0.37
CCL13Q99616 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC12.72□□□□□ -0.37
CCL13Q99616 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
CCL13Q99616 AC015936.2-201ENST00000593177 259 ntBASIC12.72□□□□□ -0.37
CCL13Q99616 AC008735.3-201ENST00000596646 500 ntBASIC12.72□□□□□ -0.37
CCL13Q99616 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC12.72□□□□□ -0.37
CCL13Q99616 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
CCL13Q99616 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
CCL13Q99616 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
CCL13Q99616 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC12.72□□□□□ -0.37
CCL13Q99616 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC12.72□□□□□ -0.37
CCL13Q99616 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
CCL13Q99616 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC12.72□□□□□ -0.37
CCL13Q99616 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC12.72□□□□□ -0.37
CCL13Q99616 AL137783.1-201ENST00000623494 1896 ntBASIC12.72□□□□□ -0.37
CCL13Q99616 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
CCL13Q99616 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC12.72□□□□□ -0.37
CCL13Q99616 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC12.72□□□□□ -0.37
CCL13Q99616 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
CCL13Q99616 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL13Q99616 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC12.71□□□□□ -0.37
CCL13Q99616 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCL13Q99616 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms