Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Tro-202ENSMUST00000087258 6559 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 AC126444.1-201ENSMUST00000225938 1768 ntBASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Gm37472-201ENSMUST00000192342 4052 ntBASIC14.09□□□□□ -0.15
Vps53Q8CCB4 CT573086.2-201ENSMUST00000227277 4992 ntBASIC14.09□□□□□ -0.15
Vps53Q8CCB4 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps53Q8CCB4 AC160411.1-201ENSMUST00000218544 4560 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Vps53Q8CCB4 Stat5b-202ENSMUST00000107358 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Vps53Q8CCB4 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.15
Vps53Q8CCB4 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Vps53Q8CCB4 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Vps53Q8CCB4 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Vps53Q8CCB4 Nupl1-206ENSMUST00000225111 2936 ntBASIC14.08□□□□□ -0.15
Vps53Q8CCB4 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Vps53Q8CCB4 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Col6a4-201ENSMUST00000121963 7371 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Gm43908-201ENSMUST00000205074 1472 ntBASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Cad-204ENSMUST00000201182 6529 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Gm11331-201ENSMUST00000119764 288 ntBASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Gm42791-202ENSMUST00000147473 727 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Gm9022-201ENSMUST00000182482 992 ntBASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Otof-202ENSMUST00000114747 6881 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Gm45743-201ENSMUST00000212701 2795 ntBASIC14.08□□□□□ -0.16
Vps53Q8CCB4 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Grin2b-202ENSMUST00000111905 7484 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Vps53Q8CCB4 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Gm11597-201ENSMUST00000121423 964 ntBASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Gm5523-201ENSMUST00000180415 997 ntBASIC14.07□□□□□ -0.16
Vps53Q8CCB4 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Gm37201-201ENSMUST00000191845 523 ntBASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Gm29787-201ENSMUST00000222129 849 ntBASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Lclat1-201ENSMUST00000067545 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Vps53Q8CCB4 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 49.3 ms