Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL5A3P25940 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC18.54■□□□□ 0.56
COL5A3P25940 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC18.54■□□□□ 0.56
COL5A3P25940 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL5A3P25940 NSD1-211ENST00000511258 809 ntTSL 3 BASIC18.54■□□□□ 0.56
COL5A3P25940 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC18.54■□□□□ 0.56
COL5A3P25940 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC18.54■□□□□ 0.56
COL5A3P25940 AC002044.2-201ENST00000624910 970 ntBASIC18.54■□□□□ 0.56
COL5A3P25940 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
COL5A3P25940 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL5A3P25940 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC18.54■□□□□ 0.56
COL5A3P25940 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL5A3P25940 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL5A3P25940 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.54■□□□□ 0.56
COL5A3P25940 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC18.54■□□□□ 0.56
COL5A3P25940 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC18.54■□□□□ 0.56
COL5A3P25940 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL5A3P25940 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
COL5A3P25940 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
COL5A3P25940 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
COL5A3P25940 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL5A3P25940 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL5A3P25940 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC18.54■□□□□ 0.56
COL5A3P25940 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC18.54■□□□□ 0.56
COL5A3P25940 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC18.54■□□□□ 0.56
COL5A3P25940 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC18.54■□□□□ 0.56
COL5A3P25940 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC18.54■□□□□ 0.56
COL5A3P25940 RN7SL396P-201ENST00000471086 295 ntBASIC18.54■□□□□ 0.56
COL5A3P25940 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC18.54■□□□□ 0.56
COL5A3P25940 ALG1L13P-202ENST00000519320 584 ntBASIC18.54■□□□□ 0.56
COL5A3P25940 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC18.54■□□□□ 0.56
COL5A3P25940 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC18.54■□□□□ 0.56
COL5A3P25940 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL5A3P25940 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC18.54■□□□□ 0.56
COL5A3P25940 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL5A3P25940 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL5A3P25940 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
COL5A3P25940 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC18.53■□□□□ 0.56
COL5A3P25940 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
COL5A3P25940 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL5A3P25940 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC18.53■□□□□ 0.56
COL5A3P25940 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL5A3P25940 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL5A3P25940 RGS5-216ENST00000449680 788 ntTSL 3 BASIC18.53■□□□□ 0.56
COL5A3P25940 DUX4L50-201ENST00000455245 715 ntBASIC18.53■□□□□ 0.56
COL5A3P25940 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC18.53■□□□□ 0.56
COL5A3P25940 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL5A3P25940 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL5A3P25940 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
COL5A3P25940 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC18.53■□□□□ 0.56
COL5A3P25940 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL5A3P25940 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
COL5A3P25940 RNF165-205ENST00000588679 2904 ntBASIC18.53■□□□□ 0.56
COL5A3P25940 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL5A3P25940 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC18.53■□□□□ 0.56
COL5A3P25940 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC18.53■□□□□ 0.56
COL5A3P25940 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC18.53■□□□□ 0.56
COL5A3P25940 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL5A3P25940 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC18.53■□□□□ 0.56
COL5A3P25940 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
COL5A3P25940 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL5A3P25940 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL5A3P25940 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
COL5A3P25940 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
COL5A3P25940 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A3P25940 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A3P25940 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC18.52■□□□□ 0.56
COL5A3P25940 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC18.52■□□□□ 0.56
COL5A3P25940 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A3P25940 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
COL5A3P25940 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A3P25940 KRT17P5-201ENST00000332088 839 ntBASIC18.52■□□□□ 0.56
COL5A3P25940 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A3P25940 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC18.52■□□□□ 0.56
COL5A3P25940 DBP-202ENST00000593500 712 ntTSL 2 BASIC18.52■□□□□ 0.56
COL5A3P25940 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC18.52■□□□□ 0.56
COL5A3P25940 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A3P25940 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A3P25940 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A3P25940 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A3P25940 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC18.52■□□□□ 0.56
COL5A3P25940 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A3P25940 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A3P25940 AL136172.1-201ENST00000598590 1394 ntBASIC18.52■□□□□ 0.56
COL5A3P25940 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A3P25940 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A3P25940 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A3P25940 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
COL5A3P25940 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL5A3P25940 HLA-DQB2-231ENST00000435145 2026 ntBASIC18.52■□□□□ 0.55
COL5A3P25940 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COL5A3P25940 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL5A3P25940 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COL5A3P25940 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC18.52■□□□□ 0.55
COL5A3P25940 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL5A3P25940 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL5A3P25940 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL5A3P25940 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COL5A3P25940 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC18.52■□□□□ 0.55
COL5A3P25940 RPS23-204ENST00000507980 836 ntTSL 2 BASIC18.52■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms