Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC14.34□□□□□ -0.11
LDB3O75112 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
LDB3O75112 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC14.34□□□□□ -0.11
LDB3O75112 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
LDB3O75112 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
LDB3O75112 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.34□□□□□ -0.11
LDB3O75112 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
LDB3O75112 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.34□□□□□ -0.11
LDB3O75112 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.34□□□□□ -0.11
LDB3O75112 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
LDB3O75112 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
LDB3O75112 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
LDB3O75112 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 AC006058.4-201ENST00000624016 1670 ntBASIC14.34□□□□□ -0.11
LDB3O75112 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
LDB3O75112 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
LDB3O75112 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
LDB3O75112 AL139094.1-201ENST00000405549 1188 ntBASIC14.34□□□□□ -0.11
LDB3O75112 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC14.34□□□□□ -0.11
LDB3O75112 KLF2P2-201ENST00000416807 1039 ntBASIC14.34□□□□□ -0.11
LDB3O75112 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.34□□□□□ -0.11
LDB3O75112 HLA-K-203ENST00000430151 1046 ntBASIC14.34□□□□□ -0.11
LDB3O75112 ACTG1P3-201ENST00000431775 1114 ntBASIC14.34□□□□□ -0.11
LDB3O75112 TTTY23B-201ENST00000442790 549 ntBASIC14.34□□□□□ -0.11
LDB3O75112 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.34□□□□□ -0.11
LDB3O75112 KRT17P7-201ENST00000451704 1104 ntBASIC14.34□□□□□ -0.11
LDB3O75112 AC007389.4-201ENST00000454674 793 ntBASIC14.34□□□□□ -0.11
LDB3O75112 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
LDB3O75112 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
LDB3O75112 PTP4A1P2-201ENST00000546033 454 ntBASIC14.34□□□□□ -0.11
LDB3O75112 AC009486.1-201ENST00000569860 813 ntBASIC14.34□□□□□ -0.11
LDB3O75112 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.34□□□□□ -0.11
LDB3O75112 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.34□□□□□ -0.11
LDB3O75112 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.34□□□□□ -0.11
LDB3O75112 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
LDB3O75112 ACE3P-201ENST00000423435 1973 ntBASIC14.34□□□□□ -0.11
LDB3O75112 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.34□□□□□ -0.11
LDB3O75112 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.34□□□□□ -0.11
LDB3O75112 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
LDB3O75112 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
LDB3O75112 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LDB3O75112 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
LDB3O75112 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
LDB3O75112 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
LDB3O75112 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
LDB3O75112 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.33□□□□□ -0.11
LDB3O75112 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
LDB3O75112 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
LDB3O75112 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
LDB3O75112 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
LDB3O75112 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
LDB3O75112 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.33□□□□□ -0.12
LDB3O75112 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.33□□□□□ -0.12
LDB3O75112 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.33□□□□□ -0.12
LDB3O75112 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.33□□□□□ -0.12
LDB3O75112 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.33□□□□□ -0.12
LDB3O75112 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.33□□□□□ -0.12
LDB3O75112 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.33□□□□□ -0.12
LDB3O75112 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
LDB3O75112 ACKR1-201ENST00000368121 1240 ntBASIC14.33□□□□□ -0.12
LDB3O75112 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.33□□□□□ -0.12
LDB3O75112 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.33□□□□□ -0.12
LDB3O75112 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.33□□□□□ -0.12
LDB3O75112 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.33□□□□□ -0.12
LDB3O75112 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.33□□□□□ -0.12
LDB3O75112 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 AC022137.2-201ENST00000503482 481 ntBASIC14.33□□□□□ -0.12
LDB3O75112 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.33□□□□□ -0.12
LDB3O75112 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
LDB3O75112 RBM7-207ENST00000544582 692 ntTSL 3 BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms